Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00360 ATGAAGAGGTGGGGCACCTGGGAGGAGCTCCTCCTTGGTGGGGCCATTCTCCGTCATGGAACCAATGATTGGAACATTGTTGCCACCGAGCTCAGAACCCGAACAGGTTTTCCTTACACCATTACTCCCGAGATGTGTAAAGCCAAATATGAAGATTTGCAACAACGATATTCTGGAAACAAGGCTTGGTATGAGGAGCTGAGGAAGACTAGAGTAGCAGAGTTGAAGAGATCTCTAGAGCTATCTGAAGATTCAATTGGGTCTCTTGAATCTAAGCTTGAAAGCCTCAAGGCTGGTAAGAATGAGAAAAGAGATGGTTGTCATGTTGATAATGGATCAGGTCGTCCAAAGTTGCATGTAGCTTCACATAAATTAGAAAGAGTTGAATCTTCCACCAAAGAGACATCAAAGGATGGACTATCTGCTGGAAGTTTCACACATGAAACTGGGACAAATTGGTCTCCCAAATGTCTAGTTTCATCTGTGCCTGTTCAAGATTTGGATACTAAGCCTGAGGTTTTACACTCCACAAAGCAGCTTAAAGTTTTGAATGTAGATAAGTTAGCATATACTATATACGAAGGAGAAGGGGGAAGTTTCAAAAAACGAAGAGGGAAGAGGAAAAGGAAGGATTGTGGCAAAAATACCAAGGAAGCAAGTATAGCAGAAAGTGTTTTGTTAGATTCAGTTGATGTTATGTCATGGTGTAAAGAGAGTTCTACCAGTAACTACAGTGAAGTTGCCAAATCATGTGGTGTAAATTATCAAAATAGGAACCTGAAAAAGGGTAGGGTGGAAGACTTGATGAAGATTTTGGATTCTATTTTTGAAACTAAATGTGCTTCTGCCTTTCGTCGTAGACTTGATAGTCAGAAGAGAGGGAGGTACAAGAAAATGATCCGACAACACATGGACTTTGACACCATAAGGTCAAGAATTAGCAACCAAACAATTAAATCAAGTGTAGAACTTTTTCGAGACTTGCTCCTACTCACTAACAATGCTTTAGTATTCTACTCCAAGAGCACTCGTGAGTACAAATCTGCTCTACTACTAAGAGACATTGTGACCAAAAAAATAAAGGAAAGTTTGAAGGGCACAAGTAGCAGAGTCACCACTCAAGTTACTAATGTGCCAATTAAATTATCTATGCATAATCCTCATGTGAAACCAAGAAGTATACGATCTGGCAGTAGAAAAATAGTTGCAAAAGCAAGTGGTGGAAATAACTTTGTATCTGGAGTTTCACATGGTACAAAGAAACCTAGTAAAGTTGACTCTCCATCCTCAGTGGAATCCTTAAGCGTGAAGAAGAAAGGTTTTGGTCGACCAAAAAAGGTTGGACGAGGAACTGCAACTCAAAAGCCTGCAATACCAATGAAGGGAAAGAAAAAAGTTAAGACCAAGTAA 1410 0.4 MKRWGTWEELLLGGAILRHGTNDWNIVATELRTRTGFPYTITPEMCKAKYEDLQQRYSGNKAWYEELRKTRVAELKRSLELSEDSIGSLESKLESLKAGKNEKRDGCHVDNGSGRPKLHVASHKLERVESSTKETSKDGLSAGSFTHETGTNWSPKCLVSSVPVQDLDTKPEVLHSTKQLKVLNVDKLAYTIYEGEGGSFKKRRGKRKRKDCGKNTKEASIAESVLLDSVDVMSWCKESSTSNYSEVAKSCGVNYQNRNLKKGRVEDLMKILDSIFETKCASAFRRRLDSQKRGRYKKMIRQHMDFDTIRSRISNQTIKSSVELFRDLLLLTNNALVFYSKSTREYKSALLLRDIVTKKIKESLKGTSSRVTTQVTNVPIKLSMHNPHVKPRSIRSGSRKIVAKASGGNNFVSGVSHGTKKPSKVDSPSSVESLSVKKKGFGRPKKVGRGTATQKPAIPMKGKKKVKTK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00360 469 SMART bromo_6 261 365 IPR001487 GO:0005515
Phco11g00360 469 MobiDBLite consensus disorder prediction 408 469 - -
Phco11g00360 469 CDD SANT 3 50 IPR001005 -
Phco11g00360 469 ProSiteProfiles Bromodomain profile. 276 346 IPR001487 GO:0005515
Phco11g00360 469 MobiDBLite consensus disorder prediction 409 434 - -
Phco11g00360 469 MobiDBLite consensus disorder prediction 100 143 - -
Phco11g00360 469 Coils Coil 72 92 - -
Phco11g00360 469 Gene3D - 258 378 IPR036427 GO:0005515
Phco11g00360 469 CDD Bromodomain 266 360 - -
Phco11g00360 469 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 176 428 - -
Phco11g00360 469 SUPERFAMILY Bromodomain 266 364 IPR036427 GO:0005515
Phco11g00360 469 MobiDBLite consensus disorder prediction 100 134 - -
Phco11g00360 469 Pfam Bromodomain 269 349 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00360 Phco-Chr11 2325614 2330661 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco11g00360 Bromodomain 3.8e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02562 4 46865845 46871231 Phco11g00360 11 2325614 2330661 PCT