Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00343 ATGGCTTCGGCTTCTTCTTCTTCGTCCAAACTGTGCTTTAATTCTGACTGCAAAGAATTGAGGCCCGAAAGACCTAAGAAAGGTTGGAGGCTCCGTAGCGGAGAACTAGCCGAGCTCTGTGATCGATGCGGCTCTGCTTTTGAAGACGGGAAGTTCTGTGAAATTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTAGAAAGAGAATTCATTGTGGGTGTATTGTTTCAAGTCATTCCTTCATGTTGTTGGATCCCGGAGGAATTGAATGTTATACATGTGCCCGCAAAAGTATTATTATGCCTTCTAACCTGCCGTGGCCACAATCTTTTTCCCTTCAAAATCGTTTATCGGATAGACTTAGAGATCTATCTGCTAAAGGTTGGAATCAGTTGGCTGGATCAGGTCCTGTACCCTGGAAGCAAGCGCCCAGTCTGTTCAATTCTGCTTCTTCATCCGACCTGATCTCAGATGTTCCTTCTTTAGCTGAATTATCCAATAGCTTTGACAAAATGTATTGTAATGAAAGGTTACCTGCCTCAGCCTTGGAAAAGAAAAGTGAGGATTTTCCTGGATTACCAGTTCATTGGAATGTCACCATTTGCCCACGAGAGATGAAGCATATGAATGGAATGAGGAATGAGGACAAAGCAAGTTCGTGTTTAAATATGTGTCAGCAGCCTTCTTCTCTGAAGGAAGAGTCATCTCCTCAACCATTTGGTTTGGCTGTACCTAATTCATGCCAAAATGAAAGAAATGGTCAACTTGGGGTAACTGGAAGTCACCCTCAACAAACTCCACCACCTCCAGGAAAGCAATTTAATGGCACTATGCATTTAGCACCTGACTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGGCCTCGAGCAGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCCAGGTGTACTGATCTAGAACTACAACAAATATCAATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAAAAAACCTTGAGTGCAAGTGATGCTGGACGAATTGGGCGTTTAGTCCTACCCAAAAAGTGTGCTGAGACGTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCGCTTAAAATCCTTGATGCAAAAGGAAAGGAGTGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTTACTCCATGCATACAGTCCATGCAGTTACAGGCTGGTGACACTGTAACATTTAGCCGGTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCTAGTGCCGCGCCATCCGACCAGGACAATGAAACCAATAAGTCTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGTAAATCATTAATATCTAGGAAAAGAAAGAGCGGCATATTGGGCTCAAAGAGTAAACGACTAAGAATTGAAAATGAGGATTTGATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGTCTGCTCCGCCCTCCTCCTAGCCACATTCCGAGCATTGTTGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGCGAAGATTGTCTCAAGTGGCGCAAATTACCAGCAAGTGCGCTTCTTCCATCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGCTGACAGCAGAGCAACTTGAGAATTTGCTACCTTCGTGTAATTCAGCTGTTCCCAAGAGAATGAAGTCCACCAAACAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTTGACACCCTCGCAAATTTAGCTATTCTGGGAGAGGGTGAGGCACTCCCAGCGTCAGCCCAGGCCACAACTAAGCACCCACGCCATAGACCTGGCTGTTCTTGCATTGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGTACATGTAATGTATGCTTAACAGTGAAGCGACGTTTCCATACCCTTATGTTACGGCGTGAGAAGAAACAATCCGAAAAAGAAGCAGAGACAACTCGTAAAAAACAACAGCAACAGCATCCACAACCTCTACCTTCGTCTGAAATTTTGCTTGACGAAGATTCATTACCCTGTAGTAACACAGGTGATAGCAGCCCGAACCAGAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAACAGAATAAAATCATCTGCTTCACCATTCAAAGGCCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTGTCACCTGGTTCAGATTCTGGTGGCATGATGAAGTTGCTCCATGATGCTAGATATCTGAAGCAGCAGACTGTGAACTCCGGTACTGGAGATTCTGCAGGCAGTCAGTCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTACCCATGGAAGTAGTAGTCATAGTACTGATAGGAACATGGCCAATCTTTGTCCATGA 2628 0.4437 MASASSSSSKLCFNSDCKELRPERPKKGWRLRSGELAELCDRCGSAFEDGKFCEIFHSNASGWRSCETCRKRIHCGCIVSSHSFMLLDPGGIECYTCARKSIIMPSNLPWPQSFSLQNRLSDRLRDLSAKGWNQLAGSGPVPWKQAPSLFNSASSSDLISDVPSLAELSNSFDKMYCNERLPASALEKKSEDFPGLPVHWNVTICPREMKHMNGMRNEDKASSCLNMCQQPSSLKEESSPQPFGLAVPNSCQNERNGQLGVTGSHPQQTPPPPGKQFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAAPSDQDNETNKSGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSGILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDNVGEKIQWAQCEDCLKWRKLPASALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPSCNSAVPKRMKSTKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKEAETTRKKQQQQHPQPLPSSEILLDEDSLPCSNTGDSSPNQNKEGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDARYLKQQTVNSGTGDSAGSQSQLVGDAMREDKLSNGVTHGSSSHSTDRNMANLCP 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00343 875 Gene3D - 314 440 IPR015300 -
Phco11g00343 875 MobiDBLite consensus disorder prediction 439 455 - -
Phco11g00343 875 CDD B3_DNA 334 435 IPR003340 GO:0003677
Phco11g00343 875 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Phco11g00343 875 Gene3D - 568 621 - -
Phco11g00343 875 MobiDBLite consensus disorder prediction 719 734 - -
Phco11g00343 875 MobiDBLite consensus disorder prediction 752 770 - -
Phco11g00343 875 MobiDBLite consensus disorder prediction 855 875 - -
Phco11g00343 875 SMART B3_2 336 437 IPR003340 GO:0003677
Phco11g00343 875 SUPERFAMILY DNA-binding pseudobarrel domain 333 435 IPR015300 -
Phco11g00343 875 MobiDBLite consensus disorder prediction 232 265 - -
Phco11g00343 875 Pfam CW-type Zinc Finger 569 611 IPR011124 GO:0008270
Phco11g00343 875 ProSiteProfiles Zinc finger CW-type profile. 564 614 IPR011124 GO:0008270
Phco11g00343 875 MobiDBLite consensus disorder prediction 232 298 - -
Phco11g00343 875 MobiDBLite consensus disorder prediction 719 875 - -
Phco11g00343 875 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Phco11g00343 875 MobiDBLite consensus disorder prediction 434 460 - -
Phco11g00343 875 Coils Coil 718 738 - -
Phco11g00343 875 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 9 837 - -
Phco11g00343 875 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Phco11g00343 875 MobiDBLite consensus disorder prediction 824 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00343 Phco-Chr11 2225700 2238187 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco11g00343 B3 1.2e-15 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00343 11 2225700 2238187 Phco11g00343 11 2225700 2238187 ECH