Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00329 ATGAGACACGTAGCCAATGCCCAGAGGGATAACAGGAGGACGGCACCGAATCAATTTGACTTCTGCTTCTTTCTTAATCTTCACTTTCTTCCTATTTATACCACAAAACAACTAGTACGTCCCACTACGGACCCTACTCTCATAACTCCATTCTTTTCTTCCTCTCTTTCGTCTCAAATCTTTTCTCCTCTCTCTCTCTCGTCACCTTCAACCATTACTCATTCACCTTACCTCAACAAGGTTTCATTTAGCTTAGCAACACACAACTTAGCTGCTTCTGCCATGGGAAGAGCACCTTGTTGTGAAAAGAATGGCCTCAAGAAAGGACCATGGACCACTGAGGAGGATCAGAAACTCGTTGATTACATTCACAAACATGGATGTGGGAATTGGAGGACACTCCCAAAGAATGCTGGGTTGCAGAGATGTGGAAAGAGTTGCCGTCTTCGTTGGACAAACTATCTCCGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAATAATTCAGCTGCATAGCATTCTTGGCAACAAGTGGTCTGCGATTGCCTCTCGCTTACCAGGAAGAACAGACAACGAAATCAAGAACTATTGGAACACACACATTAGAAAAAGGCTTTTGAGGATGGGAATTGACCCTGTCACACACAGTCCTCGACTTGATCTATTGGACATCTCCTCCATTCTAAACGCATCTTTCTATGGTTCATCACAAATGCTCCTTGGCATGCAGCAGTCTATGGTGAACCCCGAGCTTTTAAGGTTGGCTTCCTCGCTCGTCTCCTCCTCACAGCAACACAAAGACCTTGACATGTGTGTTCCAAAGGGTCAACACAACCAGCTTTGCGATCCACAAGTTCAGAATCATGTTCCACACTTCGTACAATTTCAAGATCCAGTTCAAGAGGTGCCTGCATGCAGCACCACCGTGTTCAGCACCGCTTGTGTTTCATTGCCTCTCTCTCAGCCACAGTTGGTTGAGCCCCATAATGTGGACCCATATCCATCATCAACTTTCACAGACTTCACTTACCAACAACATTCTCATGATGATCAGATAATAAGTGATTGGCACAAAGATGGGGTTGCTTTAAGCACTTTAACAGATGACTACGTCCCTCAGTTATCAAGCTATAATTATTATAGTTCTGATGATCTCATGTATCCTCCATTATCCGAACCTTCAACTTTCCATTCCAATAACAGCAATCAGAACTTCAGCTTCGCTTCAGTTCTATCCACACCTCCGTCAAGCCCTACACCGTTGAACTCAAACTCCACGATAATCAATGGGAACAACACAGAAGACGAGAGAGATCAAAGCTATGACAGTAGCAGCATGTTGAAATTTGAAATCCCAGATATTTTAGATGTGAATGAGTTCATGTAA 1401 0.4375 MRHVANAQRDNRRTAPNQFDFCFFLNLHFLPIYTTKQLVRPTTDPTLITPFFSSSLSSQIFSPLSLSSPSTITHSPYLNKVSFSLATHNLAASAMGRAPCCEKNGLKKGPWTTEEDQKLVDYIHKHGCGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSILNASFYGSSQMLLGMQQSMVNPELLRLASSLVSSSQQHKDLDMCVPKGQHNQLCDPQVQNHVPHFVQFQDPVQEVPACSTTVFSTACVSLPLSQPQLVEPHNVDPYPSSTFTDFTYQQHSHDDQIISDWHKDGVALSTLTDDYVPQLSSYNYYSSDDLMYPPLSEPSTFHSNNSNQNFSFASVLSTPPSSPTPLNSNSTIINGNNTEDERDQSYDSSSMLKFEIPDILDVNEFM 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00329 466 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 95 332 - -
Phco11g00329 466 FunFam MYB-related transcription factor 107 160 - -
Phco11g00329 466 Gene3D - 107 160 - -
Phco11g00329 466 MobiDBLite consensus disorder prediction 412 439 - -
Phco11g00329 466 SMART sant 107 157 IPR001005 -
Phco11g00329 466 SMART sant 160 208 IPR001005 -
Phco11g00329 466 Pfam Myb-like DNA-binding domain 108 155 IPR001005 -
Phco11g00329 466 Pfam Myb-like DNA-binding domain 161 205 IPR001005 -
Phco11g00329 466 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Phco11g00329 466 Gene3D - 163 210 - -
Phco11g00329 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 210 IPR017930 -
Phco11g00329 466 FunFam Transcription factor MYB39 163 224 - -
Phco11g00329 466 CDD SANT 110 155 IPR001005 -
Phco11g00329 466 CDD SANT 163 206 IPR001005 -
Phco11g00329 466 MobiDBLite consensus disorder prediction 412 448 - -
Phco11g00329 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 155 IPR017930 -
Phco11g00329 466 SUPERFAMILY Homeodomain-like 105 202 IPR009057 -
Phco11g00329 466 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00329 Phco-Chr11 2135326 2136947 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco11g00329 Myb_DNA-binding 5.6e-16 CL0123