Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00326 ATGGGGCGGAAATCGACGCCGGCGGAGGAAGGAAAAGCGGTACCAGAGCATCTACGGTGCAACCGGACGGACGGGAGGCAATGGCGGTGCCGGCGGCGAGTGATGGAAAACCTAAAGCTCTGCGAGATTCACTACCTTCAAGGTCGGCATCGGCAGCACAAGGAGACGGTTCCGGAGTCGCTGAAGCTTCAGAGAAAGAGGCAAAACGATGCCGTTGAGACTAAGATTGGGGCGAAGCGCAAGCGCAAATCGAGAGAAGCATTGGTCAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAAGAAGAAGGAATCGCAATTGAATTTGCCTTTGAATTTGAATTTGCACTCCAATCACGAGTTGAGGAAGGAGTTGCCGAACGGTGTTATGGCTATCGCTTCCGCTTCGACGCCCAATGTGGCTTCTTGTTCTCGTTACTTCAGGTCCAAGAATGTTGAGAGGGGTTCTGTTGCCAAGTTGCAGGTTTTGCAGTGTGGACGAAACTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCCTACAGTCTTATAAGGTGCTCAAACTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGTACCTGTAAAGATTGCTTGGCACGTCAACATGAAGACAGTGAAAGTAAGGAACATTTGGCTGGTAAAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTGAAACAAATAAAAGAAGACCACCACGTGGGTGTAGAAACAAAAGCGAAAATTAAAGGAAAAAGAATTAATGATATTATCATCAAACCAGTCAAGTTTGGCTGCAATGAGAAAAATTACTGCAATCACTGCAAAACACCCATTTTGGATCTTCATAAAAGCTGCCTTAGTTGCTCATACAGTCTTTGCTTAAGTTGTTCTCACGCATTAAGTCAAGGAAGAATCTCTGAACAAAACAACTACTCTATATCCAAGCTACCTGACAGAATAAGTGCTTGCATTTCTAGCGAAAGATACCTATTGGATGATAAGGCCATTTCTAATGGCAATTTAACTGATACCTCAATGTTAACTGAGTGGACAAGTTGTAATGGTGCTGCTATGGTATCATGCCCACCTACAAAACTTGATGATTGTGGTAATAGCCACCTTGATCTGAACTATGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAATGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAGTTCAAGTTGCCCAATGTGTGTCGACAAAGATCATAAAACTAGCAGATACAAGCAGCTACCGGAAGCGGCTCAAAGGGAAGATTCTAATGATAATTATTTGTTTTATCCTACAGTTTTTGACATCGACAGCAATCATTTTGAACACTTTCAGAAACACTGGGGAAGAGGCCATCCTGTAGTGGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTCTGCACTTATCTTGAGCGGAGCATGACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACTGACGTTAGGCAGTATTTTACTGGGTCTCTTAAATGTCAACCAAAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAACTAATTGATGCTCTTCCAATTCAAGAATACATGAATCCTTTGTCAGGTCTTCTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAAAACATGACATAGGACCATATCTTTATATTTCATATGGCTGTGCTGATGATGAAGCTGATTCCGTGACAAATCTCTGTTATGACTCATATGACATGGTTAATGTTATGGCACATTCCATGGACATCCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTACTGAAAAAACACAAAGTTCTATGTCAAAAGGTGTCATCTAAAACTACTACTGAGCATGCAGAAGACAGGGAACAAAATGAAATGCAAAGTTTGGTAAGAGAAGGAACTGACTTTTTAAGGAGAGTCAATAGAACATCTTGCATCTCTAGTGAAGCCAAAACAATATGCAATCAGAATTTAGACACCAATATTTTTGGTGATGAAGAATGTGGTTCTTATTCTGAAACTGAAAAGGCACAACGCTCTTTACCTCTCCACAGCATAGTTCTAAGCACTGAAATGTCTCCAGATCATAATCCTAGAAATTCCTTTGAAAACTCAGACAATGTTAAAAGGAAGAAGGCTACAGCGAATGCTGGCGCTCAATGGGATGTCTTTCGAAGGCAAGATGTGCCAAAGCTCTTAGAATACCTTAAAAGACACTCTGATGAATTTTCTTATACTAGTGAACATCACGAGAAGGTGATTCATCCACTTCTTGATCAAAGCTTCTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCATGTGGAATTGGAATTTGTGTCCCCTGAGAATGTTGCCGAGTGTATCCAATTGATTGATGAGGTCCGGCTGCTTCCAGAAGACCACCCCGCAAAAGTAGAAAAACTGGAGGTGAAAAAAATGGCCCTTCATAGCATGAGTACAGCAATAAAAGAAATACGTGAGCTTACATGCAGAACATGA 2883 0.4131 MGRKSTPAEEGKAVPEHLRCNRTDGRQWRCRRRVMENLKLCEIHYLQGRHRQHKETVPESLKLQRKRQNDAVETKIGAKRKRKSREALVNRRNQLELIRMVLQREVEKKKKKESQLNLPLNLNLHSNHELRKELPNGVMAIASASTPNVASCSRYFRSKNVERGSVAKLQVLQCGRNLKKGRRKKCHWCQRSDSYSLIRCSNCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCLARQHEDSESKEHLAGKNRVDRILHFHYLVCMLLPVLKQIKEDHHVGVETKAKIKGKRINDIIIKPVKFGCNEKNYCNHCKTPILDLHKSCLSCSYSLCLSCSHALSQGRISEQNNYSISKLPDRISACISSERYLLDDKAISNGNLTDTSMLTEWTSCNGAAMVSCPPTKLDDCGNSHLDLNYVFPLSWIKEMEANAEEIVCSYDFPETLDKSSSCPMCVDKDHKTSRYKQLPEAAQREDSNDNYLFYPTVFDIDSNHFEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFMFCTYLERSMTRYENNKDLLEACLDWFEVETDVRQYFTGSLKCQPKKNTWHEMLKLKGWLSSQLFKEQFPAHFAELIDALPIQEYMNPLSGLLNLAANLPQGSTKHDIGPYLYISYGCADDEADSVTNLCYDSYDMVNVMAHSMDIPLSTDQLSRISKLLKKHKVLCQKVSSKTTTEHAEDREQNEMQSLVREGTDFLRRVNRTSCISSEAKTICNQNLDTNIFGDEECGSYSETEKAQRSLPLHSIVLSTEMSPDHNPRNSFENSDNVKRKKATANAGAQWDVFRRQDVPKLLEYLKRHSDEFSYTSEHHEKVIHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVAECIQLIDEVRLLPEDHPAKVEKLEVKKMALHSMSTAIKEIRELTCRT 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00326 960 Pfam WRC 15 55 IPR014977 -
Phco11g00326 960 ProSiteProfiles Zinc finger RING-type profile. 186 232 IPR001841 -
Phco11g00326 960 SUPERFAMILY Clavaminate synthase-like 499 948 - -
Phco11g00326 960 ProSiteProfiles JmjC domain profile. 619 923 IPR003347 -
Phco11g00326 960 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 958 IPR045109 GO:0032454|GO:0033169
Phco11g00326 960 SMART cupin_9 600 923 IPR003347 -
Phco11g00326 960 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Phco11g00326 960 MobiDBLite consensus disorder prediction 783 806 - -
Phco11g00326 960 Coils Coil 85 112 - -
Phco11g00326 960 Pfam JmjC domain, hydroxylase 811 906 IPR003347 -
Phco11g00326 960 Gene3D Cupin 492 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00326 Phco-Chr11 2103045 2108908 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco11g00326 JmjC 5e-10 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02525 4 46462841 46468633 Phco11g00326 11 2103045 2108908 PCT