Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00313 ATGGTTTTCCCAACTCACACTTGTTTGCTAAATGCTTTCTTCACAGTATTTTCCATCATTTTTCTGGGTTTGACCTCTGCCAGGGACACTCTTACATATTCTGAATCCATCAGAGACTCAGAGATAGTAACCTCAAACGACAGTGTCTTCATACTTGGTTTCTTCAGCCCTCAGAATTCAACGCACCGCTATGTAGGAATCTGGTATCTCTCTGACTCCAACGTCATATGGATAGCTAATAGAGACCAACCACTCCTTGATTCTTCTGGGGTTTTGAAAATCTCCAAAGATGGTAACCTGGTTCTAGTTGATGGAAAAAACCAAGTTATTTGGTCGTCCAATGTGTCAAACACTGCAACAATGAATTCCACTGCTCAAATTTCCCATTATGGGAATCTAGTTCTGAAAGATGACTCCACGGGACAGACCATATGGGAGAGTTTCGAGCATCCTTGTGATGCAGCAGTGCCAACCATGAAGATCAGTGCTAACAAAATCACAGGTGAGAAAATACAGTTTGTGTCAAGGAAAAGTGCTTCCGATCCTTCTACTGGCTATTTCTCTGCTTCTCTTGAACGTTTGCATGCTCCAGAGGTGTTTATATGGATTAATGGAACTCGACCTTATTGGAGGACTGGTCCATGGAATGGTAGAATCTTCATTGGGACACCATTGATGTCAACTGGGTATCTTTATGGATGGAGTGTAGGATATGAAGGAAATGATATTGATTATCTAACTTACAGTTTTGCAGACCCAGCTTCATTTGGAATCCTTACCTTGTCTCCAGAAGGAAAGCTTAAATTGGTAAGGTATTATAACAAAAAGCAAGGGTTGACTTTGGATCTAGGAATTTCTGATTGCGATGTTTATGGAACATGTGGGGCATTTGGAAGCTGTAACGGGCAGAGTTCACCAATATGTAGCTGTTTGAGTGGATATGAGCCCAGGAATCAAGAGGAGTGGAGAAGGAAAAATTGGACTAGTGGGTGTGTGAGAAAGGTGCCACTCAATTGTGAGAGGTTAGATAATGGGAGTGAAGCTGTGCAAGAAGATAGATTTTTGAAACTTGAAACTATGAAAGTACCAGATTTTGCGGAGAGATTAGATGTTGAGGAAGGCCAGTGTGGAACACAGTGCTTGAAGAATTGCTCTTGTTTGGCGTATGCATATGATGCTGGCATTGGGTGCTTGTATTGGACCAGAGACTTAATTGACTTGCAAAAATTCCAAACTGCAGGCATTGATCTCTACATCCGTCTTGCCCATTCAGAATTTCAATCCAGTAATGCACAAGAGCAGACTAATAAAAGAAGAGGCAAGGGATTAATCATCGAAATTACATTGGCAACTGCTGGAGCAATCATCTTGGCCATCTGTGCTTATCTAGCCATTCGTAGATTTCACTCGAGTAAGGGAACTGCTAAAAATTCGGGAAGTCAGAATAAAAGAGTGACTGCAGTCCAGAAATCAGCGAAACTGGATGAGCTACCGTTATTTGATTTTGAAGTCGTCGCAAATGCTACGAACAGTTTTCACTTAGCTAATACGCTTGGAAAGGGTGGTTTTGGTCCAGTGTACAAGGGACTATTGTCAGATGGTCAGGAAGTTGCAGTGAAAAGACTCTCCAGAGCATCTGGACAAGGTCTAGAAGAATTTATGAATGAAGTGGTGGTGATTTCTAAACTTCAACATCGCAATCTTGTAAAACTTCTTGGCTGCTGCATTGAAGGAGACGAAAAGATGCTCATCTATGAATTTATGCCAAATAAAAGTTTGGATGCATTCATCTTTGATCCACTCCGGCGAAAACTTCTAGACTGGACAAAACGTTTTACTATAGTTGAAGGAGTTGCTCGGGGCTTAATCTATCTCCACAGAGATTCTAGATTAAAAATTATACATAGAGATTTGAAGGCAAGCAATATCTTACTAGATGCAGATATGAATCCAAAAATATCAGACTTTGGTTTGGCTAGAATACATAAAGGCGAGGATGAAGTTAATACTAAGAGGGTTGTTGGCACATATGGCTATATGTCCCCTGAATATGCCATGGAAGGATTATTTTCTGAGAAATCAGATGTATATAGCTTTGGAGTTTTGTTACTGGAGATTATTAGTGGAAAAAGAAACACTAGTTTTCGTAATGATGATCAGTCTCTCAGCCTCATAGGATATGCGTGGAATCTATGGAACGAAGACAATATTAGTTTTTTGGTTGATCCAGAGATATCAGCTTCAAGATCTGAGAATCATATTTTGAGGTGCATCCATATAGCATTTCTTTGTGTGCAAGAAGTTGCAAAAACTAGACCAACTATGACTACTGTGCTTTCGATGCTTAACAGTGAGATATCCCATCTACCTCCTCCTAGGCAAGTTGCATTTGTTCAGAAGCAAAGTTCATCAAGTTTAGAGTCTTCTTCTCGAGAAAATCATTGTAATTCCAACAACCATGTAACTCTTACCGATATCCAGGGAAGATAA 2490 0.4024 MVFPTHTCLLNAFFTVFSIIFLGLTSARDTLTYSESIRDSEIVTSNDSVFILGFFSPQNSTHRYVGIWYLSDSNVIWIANRDQPLLDSSGVLKISKDGNLVLVDGKNQVIWSSNVSNTATMNSTAQISHYGNLVLKDDSTGQTIWESFEHPCDAAVPTMKISANKITGEKIQFVSRKSASDPSTGYFSASLERLHAPEVFIWINGTRPYWRTGPWNGRIFIGTPLMSTGYLYGWSVGYEGNDIDYLTYSFADPASFGILTLSPEGKLKLVRYYNKKQGLTLDLGISDCDVYGTCGAFGSCNGQSSPICSCLSGYEPRNQEEWRRKNWTSGCVRKVPLNCERLDNGSEAVQEDRFLKLETMKVPDFAERLDVEEGQCGTQCLKNCSCLAYAYDAGIGCLYWTRDLIDLQKFQTAGIDLYIRLAHSEFQSSNAQEQTNKRRGKGLIIEITLATAGAIILAICAYLAIRRFHSSKGTAKNSGSQNKRVTAVQKSAKLDELPLFDFEVVANATNSFHLANTLGKGGFGPVYKGLLSDGQEVAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVKLLGCCIEGDEKMLIYEFMPNKSLDAFIFDPLRRKLLDWTKRFTIVEGVARGLIYLHRDSRLKIIHRDLKASNILLDADMNPKISDFGLARIHKGEDEVNTKRVVGTYGYMSPEYAMEGLFSEKSDVYSFGVLLLEIISGKRNTSFRNDDQSLSLIGYAWNLWNEDNISFLVDPEISASRSENHILRCIHIAFLCVQEVAKTRPTMTTVLSMLNSEISHLPPPRQVAFVQKQSSSSLESSSRENHCNSNNHVTLTDIQGR 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00313 829 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Phco11g00313 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 790 - -
Phco11g00313 829 SMART ntp_6 349 421 IPR003609 -
Phco11g00313 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 773 - -
Phco11g00313 829 ProSiteProfiles Protein kinase domain profile. 512 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00313 829 PIRSF SRK 1 829 IPR024171 GO:0004674
Phco11g00313 829 Gene3D Transferase(Phosphotransferase) domain 1 588 790 - -
Phco11g00313 829 SMART blect_4 34 151 IPR001480 -
Phco11g00313 829 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Phco11g00313 829 CDD STKc_IRAK 518 783 - -
Phco11g00313 829 Gene3D Phosphorylase Kinase; domain 1 485 587 - -
Phco11g00313 829 Gene3D - 24 148 IPR036426 -
Phco11g00313 829 CDD B_lectin 34 151 IPR001480 -
Phco11g00313 829 Pfam PAN-like domain 349 407 IPR003609 -
Phco11g00313 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 148 - -
Phco11g00313 829 CDD PAN_AP_plant 335 422 - -
Phco11g00313 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 217 IPR036426 -
Phco11g00313 829 MobiDBLite consensus disorder prediction 807 829 - -
Phco11g00313 829 SMART serkin_6 512 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00313 829 SUPERFAMILY Protein kinase-like (PK-like) 496 814 IPR011009 -
Phco11g00313 829 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Phco11g00313 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Phco11g00313 829 FunFam receptor-like serine/threonine-protein kinase SD1-8 483 587 - -
Phco11g00313 829 Pfam D-mannose binding lectin 75 177 IPR001480 -
Phco11g00313 829 Pfam Protein tyrosine and serine/threonine kinase 513 781 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00313 Phco-Chr11 2020649 2024139 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco11g00313 PK_Tyr_Ser-Thr 1.9e-49 CL0016