Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00309 ATGGCGGCCATGTCCATCTCCGTTCTGTGTCTCTTCTCTTTCATCTCTTTCCACAATCTGTTTTCCTTCGCGGCAAGTTCAAATATCAGGATCACGCAGGATGTCGTCATCAGGGACAACGAGCGTGAGACATTGGTGTCTGAAGAGCTCAACTTCGTGATGGGTTTCTTCGGTTTAGACAACTCCTCTTCCCGCTACGTCGGAATTTGGTACCACAACATTCCCGCGACACCTGTTATATGGGTCGCAAACCGCGACAAACCCATCAACGGCACCGGAGGATCCATCACTGTTGCGAATGATGGCAACCTCGTTGTCCTCGATGGAGCCAAGAACCTTGTCTGGTCCACCAATGTTTCTATCGATAGCAGCAACAAAAACTGCTCGGCGAAGCTTCGTGACACTGGCAACCTCGTTCTCTCGAGCGAAAAGAAAGAGTTGTGGCAAAGCTTTGAGAATCCAACGGATACATTCATGCCTGGTATGAGGGTTCCAGTGGGGGCTGCAACTGGGAACAGTGGTGGCTGTGTGTTCACTTCATGGAAATCGTCAACGGATCCTTCGAAGGGAAACTACACTATGGGGGTGGATCCTGAAGGGTTGCCTCAGATAGTGGTTTGGGAAGGAAACAAAAGAAGGTGGAGAACGGGGTATTGGGATGGTATAACGTTTGAAGGGGTGTCTATGACAGGAAATTATCTTTATGGTTTTACGCTTAATGGGGATGGTAAAGGAGGTAGGTACTTCATTTATAACCCGTTAAACGGCACTGATAAGGTGAGGTTTCAAATGGGGTGGGACGGCTATGAGAGAGAATTCAGGTGGAATGAGGATGAGAAACGTTGGGATGTGATTCAAAGAGGGCCTTCGCATGAGTGCGAGGTTTACAATAAGTGTGGGAGTTTCGCGGCGTGTGATGTGTCCCCTTCGGATTTACCTGTTTGTGCTTGCATACGAGGTTTTGAACCGAAGAGTAGGGATCAGTGGGATAAGGGGAACTGGTCGAGTGGGTGTACGAGGATGACTCCGCTCAAGGCTCAGAGGAAGAATGTTACTTCCGCTGGCACTACTCAGGTTAGTGTTGGAGAGGATGGGTTCTTGGAGCGTAGGTCTATGAAGTTGCCGGATTTCGCACGTGTGGTTGGCACGAATGATTGTCAGAAAGTGTGTTTAAACGATGATTCTTGTACGGCTTATGCCAATGTTAATGGAATAGGGTGCATGGTGTGGAATGGGGATTTGGTTGACATTCAACATTATGATGGAGGAGGAAATACACTGCATATCCGTCTCGCTGATTCTGATTTAGATGATGGAGGTAAAAAGAACATCATTGTGATAATATCTTCTGTTGTGGCGGGGTTAATCTGCCTAGGAATCTTTGTATGGCTGGTGTATAGATTCAAGGTTCTGCCTACAGTTTCCCCGGCTTCTTGTTGCAAGAATAGTGATGTACTGCCAGTTTTTGATGGAAGCAAGAGCAGAGACATGTCAGCAGAATTTTCAGGATCAGCTGACCATAGTTTGGAGGGCAGCCAACTAAGGGGGCCAGAATTTCCACTTTTCAATTTCAGTTGCATTTCAGTAGCCACAAACAATTTCTCAGAAGAAAATAAGCTTGGGAAAGGGGGTTTTGGCCCTGTCTACAAGGGAAAGCTTCCAGACGGAGAACAAATAGCTGTTAAGAGGCTTTCAAGACGGTCTGGCCAAGGTTTAGAGGAGTTCAAGAATGAAATGATGCTGATAGCCAAACTACAGCACCGAAATCTGGTTAGACTAATGGGTTGTTCTATTCAAGGGGAAGAGAAGTTGCTGGTATACGAATACATGCCAAACAAAAGCTTGGATTGTTTTTTATTTAATCCATTCAAACAAACACAACTAGATTGGACAAGACGGTTTGAAATCATTGAAGGCATTGCAAGAGGATTACTCTACTTGCACCGAGATTCAAGGCTTAGAATAATTCATCGAGATTTAAAAGCGAGTAACGTTTTGTTGGATGAAAACATGAACCCAAAAATATCAGACTTTGGATTGGCTAGGATATTTGGTGGGAACCAGAATGAAGCCAATACAAACAGAGTAGTTGGTACATATGGTTATATGGCCCCTGAATATGCTATGGAAGGTCTGTTTTCGGTCAAATCTGATGTATATAGTTTTGGTGTGTTACTACTAGAAATTTTGAGTGGCCGCAGAAACACCAGTTTTCGTCACTCTGATGACTCCAGCCTCATAGGATATGCGTGGCATCTTTGGAATGAACATAGAGCAATGGAGCTAGTCGATCCATGCATTCGTAATTCTAGTCCTAAAAGCAGAGCTTTGAGATGCATACACATAGGGATGTTGTGTGTGCAAGATTCAGCAGCTCAGAGACCAAACATGTCTGCTGTGGTGTTGATGCTGGAAAGTGAAGCAACAACTCTTCCCACGCCTACGCAACCTTTGATTACTTCCATGAGGAGATCTGAGGACAGACAATTTTACATGGAGGGCCTTGATGTTTCAAATGATTTGACAGTCACAATGGTGGTAGGGAGATAG 2550 0.4518 MAAMSISVLCLFSFISFHNLFSFAASSNIRITQDVVIRDNERETLVSEELNFVMGFFGLDNSSSRYVGIWYHNIPATPVIWVANRDKPINGTGGSITVANDGNLVVLDGAKNLVWSTNVSIDSSNKNCSAKLRDTGNLVLSSEKKELWQSFENPTDTFMPGMRVPVGAATGNSGGCVFTSWKSSTDPSKGNYTMGVDPEGLPQIVVWEGNKRRWRTGYWDGITFEGVSMTGNYLYGFTLNGDGKGGRYFIYNPLNGTDKVRFQMGWDGYEREFRWNEDEKRWDVIQRGPSHECEVYNKCGSFAACDVSPSDLPVCACIRGFEPKSRDQWDKGNWSSGCTRMTPLKAQRKNVTSAGTTQVSVGEDGFLERRSMKLPDFARVVGTNDCQKVCLNDDSCTAYANVNGIGCMVWNGDLVDIQHYDGGGNTLHIRLADSDLDDGGKKNIIVIISSVVAGLICLGIFVWLVYRFKVLPTVSPASCCKNSDVLPVFDGSKSRDMSAEFSGSADHSLEGSQLRGPEFPLFNFSCISVATNNFSEENKLGKGGFGPVYKGKLPDGEQIAVKRLSRRSGQGLEEFKNEMMLIAKLQHRNLVRLMGCSIQGEEKLLVYEYMPNKSLDCFLFNPFKQTQLDWTRRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNVLLDENMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSSLIGYAWHLWNEHRAMELVDPCIRNSSPKSRALRCIHIGMLCVQDSAAQRPNMSAVVLMLESEATTLPTPTQPLITSMRRSEDRQFYMEGLDVSNDLTVTMVVGR 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00309 849 Pfam S-locus glycoprotein domain 214 325 IPR000858 GO:0048544
Phco11g00309 849 ProSiteProfiles PAN/Apple domain profile. 361 432 IPR003609 -
Phco11g00309 849 Pfam D-mannose binding lectin 79 182 IPR001480 -
Phco11g00309 849 Gene3D - 24 151 IPR036426 -
Phco11g00309 849 CDD B_lectin 43 154 IPR001480 -
Phco11g00309 849 SMART blect_4 34 154 IPR001480 -
Phco11g00309 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 151 - -
Phco11g00309 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 499 609 - -
Phco11g00309 849 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 610 812 - -
Phco11g00309 849 CDD STKc_IRAK 540 805 - -
Phco11g00309 849 Gene3D Phosphorylase Kinase; domain 1 499 609 - -
Phco11g00309 849 Pfam PAN-like domain 362 417 IPR003609 -
Phco11g00309 849 Gene3D Transferase(Phosphotransferase) domain 1 610 814 - -
Phco11g00309 849 SUPERFAMILY Protein kinase-like (PK-like) 519 832 IPR011009 -
Phco11g00309 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Phco11g00309 849 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 187 IPR036426 -
Phco11g00309 849 CDD PAN_AP_plant 363 432 - -
Phco11g00309 849 SMART serkin_6 534 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00309 849 PIRSF SRK 1 849 IPR024171 GO:0004674
Phco11g00309 849 ProSiteProfiles Protein kinase domain profile. 534 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00309 849 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 795 - -
Phco11g00309 849 SMART ntp_6 361 431 IPR003609 -
Phco11g00309 849 Pfam Protein tyrosine and serine/threonine kinase 537 802 IPR001245 GO:0004672|GO:0006468
Phco11g00309 849 ProSiteProfiles Bulb-type lectin domain profile. 28 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00309 Phco-Chr11 1999081 2002669 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco11g00309 PK_Tyr_Ser-Thr 5.1e-49 CL0016