Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00308 ATGCCAGGTTTCTTATTCTTCCTCTTTTGGTTCTTGGCATTACACATCACAATTTCATTCTCCTCAGACACCTTAACCCCAACACAAACTCTTCTAACCAACCAAACCCTGGTATCACCAACCCAAGTCTTTGCTCTGGGCTTCTTTTCCAGGACCAATTCCTCTTGGTACTTAGGCATATGGTACCACAACATAAGCAACGGACCCGTAGTATGGGTGGCCAACAGAGACAACCCTCTCCACAACTCCACAGGATTTCTAACCATCGGAGAAAACAAAAACATGGTTCTAACAACTCCATCAGGGGAACCCGTTTGGTCCTCCAATGTTACCAAATCCAACAACCCCATTCTTCAGCTTTTGGACACGGGAAATCTAGTTCTCAGAGAAGCAAACGTAACCGACCCCGCAAACTATCTATGGCAAAGCTTCGATTACCCAACAGACACACTCTTACCTGGGATGAAAATGGGGTGGAACCTAGACACTGGCGTGGAGAAACACTTAACCTCGTGGAAAATAGAAGGAAAAGACCCTTCAAGTGGAGATTACTCTTTCAAGATAGATCCTCGTGGAATACCAGAAATTTTCTTGATGGATGAAGATAATAGAATATATAGAAGTGGGCCTTGGAACGGCGAGAGATTCAGTGGGGTACCAGAGATGCAACCTGACACTGATTCCATCGTGTTTAATTTTTCATACGATAACCATGGTGTGCACTATTCCTTCTCCATTGGGAACCGCTCTATTTTGTCGAGGCTAGTTGTGACTTCGGGTGGTGAACTTCAGCGTCGTACTTGGGTGCCAAGCAGCAACATATGGACCACCTTTTGGTATGCACCTAAGGATCAGTGTGATGATTTCAGAGCGTGCGGTTCTTATGGTTTGTGTGACTCTAACGCCTCGCCGGTCTGCACCTGTATGACAGGGTTCAGTCCGAGGAACCCGCAGGCGTGGAATTTGAGAGATGGGTCTGATGGGTGTGTAAGGAACACGAATTTGGATTGTGGGACTGACAAGTTTTTGCATTTGGAGGACGTGAAGTTGCCAGAGACAAGTAGTGTGTTTGCGAACAAGAGCATGAACCTAGAGGAGTGTAAAGATTTGTGTCGCAGGAATTGTTCTTGCACTGCTTATGCCAACATTGAGGTCACAAACGGAGGAACCGGGTGCGTGACGTGGAGTACTGAACTCATAGACATGAGACGGTATTCCAGCGGTGGACAAGATCTCTTTGTCAGATTAGCAGCTTCTGATGCAGATGACACAGGATCCGCAGGTGGCTCTCACAAGACAAACCATATTGGAGAGATTGCAGGAATTACAGCTTCTGCAGCTGTAATAATTGTGGGATTGGTTATGATTTTCTGGAAGAAAAGGAAAGTGTTAAGTATATCGAATATGAAGACTACCCCCAGAGGTTCTTTCCAAAGAAGTAGAGAGTTGCTAACAAGTGACGGGGTATTTTCAACTAATAGAGAAAACTCGGGAGAAAGGAACATGGATGACATAGAGTTGCCAATGTTTGATTTTAATACCTTGACAATGGCCACAAACAACTTCTCTGAAGCAAATAAACTTGGACAAGGAGGGTTTGGTATTGTTTACAGGGGAAGGTTGATGGAAGGCCGTGATATTGCTGTCAAGAGGTTATCAAAAAACTCCGTGCAAGGAGTTGAAGAATTTAAGAATGAGGTGAAGTTAATTGTCAGACTTCAACACCGAAATCTTGTTCGGCTCTTTGGATGCTGCGTTGAGATGGATGAGAAGTTGCTAGTGTATGAGCACATGGAAAATAGAAGCCTTTATTCCATTTTGTTTGACAAAGCCAAAAAACCCATGTTGGACTGGAATAGACGCTTCAACATTATATGTGGCATAGCTAGAGGGATACTCTATCTGCACCATGATTCCAGACTTAGGATTATCCATAGGGATCTCAAGGCAAGCAACATTCTACTTGACAGTGAAATGAACCCAAAGATATCAGACTTTGGGATGGCTAGACTTTTTGGCACGAATCAGACAGAAGGAAACACATTGAGAGTTGTTGGAACATATGGTTACATGTCTCCTGAATATGCTATGGATGGGACCTTCTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTAGCGCTGGAAATTATAACTGGGAAGAAAAATAGAGGATTCTATTACTCAAATGATGATATGAATCTTCTAGGGAATGCATGGAGGCAGTGGAGAGATGGCAGTGCATTGGAACTTGTTGATTCATCAATTGGCAATTCATATTCACCAGCTGAAGTTCTCAGATGCATTCACGTTGGACTCTTGTGTGTCCAAGAACGTGCAGAAGATAGGCCAACAATGTCTTCAGTGATGTTGATGCTGAGTAGTGAATCTGCATTAATGCCACAACCCAGAAACCCTGGGTTTTCCGTAGGGAAGAATCCTGCGGAGACTGATTCTTGTTCAAGTAAGCAAGATGAATCATGGAGTGTGAACCAAGTCACAGTCACATTGCTAGATGCTAGGTAG 2526 0.4386 MPGFLFFLFWFLALHITISFSSDTLTPTQTLLTNQTLVSPTQVFALGFFSRTNSSWYLGIWYHNISNGPVVWVANRDNPLHNSTGFLTIGENKNMVLTTPSGEPVWSSNVTKSNNPILQLLDTGNLVLREANVTDPANYLWQSFDYPTDTLLPGMKMGWNLDTGVEKHLTSWKIEGKDPSSGDYSFKIDPRGIPEIFLMDEDNRIYRSGPWNGERFSGVPEMQPDTDSIVFNFSYDNHGVHYSFSIGNRSILSRLVVTSGGELQRRTWVPSSNIWTTFWYAPKDQCDDFRACGSYGLCDSNASPVCTCMTGFSPRNPQAWNLRDGSDGCVRNTNLDCGTDKFLHLEDVKLPETSSVFANKSMNLEECKDLCRRNCSCTAYANIEVTNGGTGCVTWSTELIDMRRYSSGGQDLFVRLAASDADDTGSAGGSHKTNHIGEIAGITASAAVIIVGLVMIFWKKRKVLSISNMKTTPRGSFQRSRELLTSDGVFSTNRENSGERNMDDIELPMFDFNTLTMATNNFSEANKLGQGGFGIVYRGRLMEGRDIAVKRLSKNSVQGVEEFKNEVKLIVRLQHRNLVRLFGCCVEMDEKLLVYEHMENRSLYSILFDKAKKPMLDWNRRFNIICGIARGILYLHHDSRLRIIHRDLKASNILLDSEMNPKISDFGMARLFGTNQTEGNTLRVVGTYGYMSPEYAMDGTFSVKSDVFSFGVLALEIITGKKNRGFYYSNDDMNLLGNAWRQWRDGSALELVDSSIGNSYSPAEVLRCIHVGLLCVQERAEDRPTMSSVMLMLSSESALMPQPRNPGFSVGKNPAETDSCSSKQDESWSVNQVTVTLLDAR 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00308 841 PIRSF SRK 1 841 IPR024171 GO:0004674
Phco11g00308 841 MobiDBLite consensus disorder prediction 800 826 - -
Phco11g00308 841 SUPERFAMILY Protein kinase-like (PK-like) 500 793 IPR011009 -
Phco11g00308 841 Pfam S-locus glycoprotein domain 206 315 IPR000858 GO:0048544
Phco11g00308 841 Gene3D Phosphorylase Kinase; domain 1 496 597 - -
Phco11g00308 841 CDD B_lectin 34 147 IPR001480 -
Phco11g00308 841 ProSiteProfiles EGF-like domain profile. 282 318 IPR000742 -
Phco11g00308 841 ProSitePatterns Protein kinases ATP-binding region signature. 528 550 IPR017441 GO:0005524
Phco11g00308 841 Gene3D Hepatocyte Growth Factor 334 414 - -
Phco11g00308 841 Pfam Domain of unknown function (DUF3403) 795 841 IPR021820 GO:0004674
Phco11g00308 841 Pfam Protein tyrosine and serine/threonine kinase 525 790 IPR001245 GO:0004672|GO:0006468
Phco11g00308 841 ProSiteProfiles Protein kinase domain profile. 522 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00308 841 SMART ntp_6 337 416 IPR003609 -
Phco11g00308 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Phco11g00308 841 ProSiteProfiles Bulb-type lectin domain profile. 22 141 IPR001480 -
Phco11g00308 841 SMART blect_4 28 147 IPR001480 -
Phco11g00308 841 Pfam D-mannose binding lectin 70 173 IPR001480 -
Phco11g00308 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 144 - -
Phco11g00308 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 488 597 - -
Phco11g00308 841 CDD STKc_IRAK 528 793 - -
Phco11g00308 841 MobiDBLite consensus disorder prediction 812 826 - -
Phco11g00308 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 598 801 - -
Phco11g00308 841 Pfam PAN-like domain 337 402 IPR003609 -
Phco11g00308 841 CDD PAN_AP_plant 333 417 - -
Phco11g00308 841 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 784 - -
Phco11g00308 841 SMART serkin_6 522 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00308 841 Gene3D - 17 144 IPR036426 -
Phco11g00308 841 SUPERFAMILY alpha-D-mannose-specific plant lectins 56 212 IPR036426 -
Phco11g00308 841 Gene3D Transferase(Phosphotransferase) domain 1 598 802 - -
Phco11g00308 841 ProSiteProfiles PAN/Apple domain profile. 337 417 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00308 Phco-Chr11 1991752 1996408 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco11g00308 PK_Tyr_Ser-Thr 1.7e-45 CL0016