Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00298 ATGCTCAGTTTACAAAGCCTTCAAACACATCCCTTTCCCCAACACCCACCCTCCACCCCACAAATGGAGTGTGAAGATGAGGACTGGTTATGTGTTACTATGGAAGAGTTTTCTCTTGCTACTGAAAATGGTTGTAGCAAGCAAGGGATAGGTAGGAAGAGGAACTATGATGATGACACAAGAGAGTTCAAATCAAAGAACCTTGAGACTGAGAGGAGGAGGAGGGAGAAGCTCAGTAGCAGGCTGTTGATGCTGCGTGCTATAGTGCCTATCATCACAAATATGAACAAAGCCACAATTATTGAAGATGCTATCACGTACATTGAAAAGCTTCAAGACAAAGTTCAGAGTCTCAGCCAAGAGCTTCACCAGATGGAAGCAACTTCCGAGGAAACAGCAGAGGCAAAAATAGATGAAATTGATGCTGCACAAGATATGAAGAATTTGGGGATACAGGAAGAGGTTAGAGTGGCACAAATAGATGGGAATAAACTCTGGGTTAAGATCATTATTGAGAAGAAGAGAGGAAGATTCAGGAAATTGATGGAAGCTCTCAATAATTTCAGCATTGAACTCATAGACACCAATCTCACAACCACAAAAGGAGCATTTCTTATTACAAGCTGTATACAGGACAGAGATGGTGAAAAACTTGAAATTCAACAAACCAAGGATTTGTTGCAAGATATTATTAATGGCATATAG 705 0.4071 MLSLQSLQTHPFPQHPPSTPQMECEDEDWLCVTMEEFSLATENGCSKQGIGRKRNYDDDTREFKSKNLETERRRREKLSSRLLMLRAIVPIITNMNKATIIEDAITYIEKLQDKVQSLSQELHQMEATSEETAEAKIDEIDAAQDMKNLGIQEEVRVAQIDGNKLWVKIIIEKKRGRFRKLMEALNNFSIELIDTNLTTTKGAFLITSCIQDRDGEKLEIQQTKDLLQDIINGI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00298 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 128 IPR036638 GO:0046983
Phco11g00298 234 Gene3D - 54 128 IPR036638 GO:0046983
Phco11g00298 234 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 48 228 - -
Phco11g00298 234 SMART finulus 68 117 IPR011598 GO:0046983
Phco11g00298 234 MobiDBLite consensus disorder prediction 1 23 - -
Phco11g00298 234 Coils Coil 101 135 - -
Phco11g00298 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 111 IPR011598 GO:0046983
Phco11g00298 234 Pfam Helix-loop-helix DNA-binding domain 66 112 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00298 Phco-Chr11 1930272 1931368 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco11g00298 HLH 2.6e-08 No_clan