Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00286 ATGAGTAATAGTGACTGGGTGTTGGATTATGAGTATCTAGACAACATTTCCCTCCCCACTCTTCACCCACCCAATTTCTCTTGGTCTTCTTCCTCTCCTCCTCCCACCTTCAGTGTGGAGGAAGATGACCCGTTGGGGCTTTCGGATGGTTTCAAGGAAAACGGGTCAAAAAAACGTTTGAGGTCACCTTGTTCCAAAGCATGTAAAGAGAAAATGAGAAGGGATAGACTCAATGACAGGTTTTTGGAACTGGGGTCTATCCTAGACCCTGGAAGACCTCTCAAAATGGACAAGGCTATTATATTAAGTGATGCAGTACGATTGGTGTCTCAGTTACGAGAGGAAGCTCAGAAGCTACGAGAATCCATTGAGAATCTACAAGGGAAAATCAATGAATTGAAGGCTGAGAAGAATGAGCTTCGTGAGGAGAAGCAGCGATTAAAAGCAGAGAAAGATAGCCTTGAACAGAAGATTGAGGCCTTCAGTTCACATCCTAGCTTTCTTCGTGCATTTCCAGCACCAGGACAAGTTGTTGGTAGCAAGTTGGTGCCCTTCATGGGCTATCCAGGAGTCGCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGACACCTCACAGGACCATGTACTCAGGCCTCCAGTTGCATAA 648 0.4599 MSNSDWVLDYEYLDNISLPTLHPPNFSWSSSSPPPTFSVEEDDPLGLSDGFKENGSKKRLRSPCSKACKEKMRRDRLNDRFLELGSILDPGRPLKMDKAIILSDAVRLVSQLREEAQKLRESIENLQGKINELKAEKNELREEKQRLKAEKDSLEQKIEAFSSHPSFLRAFPAPGQVVGSKLVPFMGYPGVAMWQFLPPAAVDTSQDHVLRPPVA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00286 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Phco11g00286 215 MobiDBLite consensus disorder prediction 45 59 - -
Phco11g00286 215 PANTHER BHLH TRANSCRIPTION FACTOR 4 215 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Phco11g00286 215 MobiDBLite consensus disorder prediction 29 59 - -
Phco11g00286 215 Gene3D arf6 gtpase in complex with a specific effector, jip4 111 164 - -
Phco11g00286 215 SMART finulus 67 118 IPR011598 GO:0046983
Phco11g00286 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 132 IPR036638 GO:0046983
Phco11g00286 215 CDD bHLH_AtILR3_like 66 141 - -
Phco11g00286 215 Gene3D - 52 110 IPR036638 GO:0046983
Phco11g00286 215 Pfam Helix-loop-helix DNA-binding domain 66 112 IPR011598 GO:0046983
Phco11g00286 215 Coils Coil 102 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00286 Phco-Chr11 1867482 1870080 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco11g00286 HLH 4.2e-08 No_clan