Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00269 ATGATCGCCGGAGGGATTTTCCGGTACGGCTCGGTTCCCATTATTCTCACTACTGCCCTGTTATTCCCCTGCCTCGTTGCTTCTTCTCTCTCAGATGAACGTCAACCACTCATGAAGTTCAAGTCCTCGGTACAAAGTTCAAATACAAGTGTTTTTAGTTCATGGGCACAAGAAAATTCTCCCTGCCTATTCACTGGGATTGTATGCAATTTCAAAGGCTTTGTTTCAGAAATCAATCTTCCGCAGAAACAGCTGGAGGGTACTGTTCCCTTTGATTCACTTTGCGAGCTGCAATCGCTTGAGAAGATATCTTTGGGGTCCAACAACTTGAAGGGAAGCATCAGTGAGGGGTTGAGGAAGTGCACCAACTTGAAGCATTTGGATTTGGGTGTGAATTCATTCAATGGAGAAGTGCCTGATTTGTCGAGTTTGTACAAGTTGGAGTTCTTGAACTTAAACTCCAGTGGAATTTCTGGGGTGTTTCCATGGAAATCATTGGGAAATCTAACTAGTCTTGAGTTCCTGAGTCTTGGGGATAACCTGTTGAAGGAAAATCCTTTCCCTTTGGAGGTTTTAAAACTTGAAAAATTGTATTGGCTTTACCTCACAAATTGCAGCATCACTGGGAATATTCCATTGGGGATTGGGAATCTCACTCAGCTTCAGAATCTTGAGCTTTCTGACAACCATTTGTATGGTGAGATTCCGGCTGATATAGTAAAGCTTCGGAAGCTATGGCAGCTTGAGTTATATGATAACTACCTAAGTGGGAAAATCCCAGTTGGATTTGGCAACCTTACTAGTCTTGTTAACTTTGATGCTTCTTTTAATCAGCTTGAAGGTGATCTTTCTGAGGTAAGGTCCTTAAAAAACCTTGCATCCCTTCACCTTTTTGAGAACAAGTTGTCAGGAGAAATTCCAAAGGAGCTTGGAGATCTCAAGAATCTCACAGAGCTTTCTCTTTATGTTAACAACCTCACTGGTCCTCTTCCTCAAAAGCTTGGCTCTTGGGAAGGCATGCAATACGTTGATGTTTCAGACAATTTTCTTTCTGGCCCTATACCACCTCTCCTGTGCAAGAACAATCAAATCAATGTACTAGCACTGTTGAACAACAGCTTCAGTGGAACAATACCAGAAACATATGCAAAATGCACATCTTTGATTCGTTTTCGTCTCAGCAGGAACTCACTTTCGGGTGTAGTTCCTTCAGGCATATGGGGCTTGCCAAATTTGGTTGTGTTTGATCTTGCAATGAACCAGTTTGAAGGTCCAGTGACATCTGATATTGCCAAAGCAAAATCTCTGGCTCGACTGTTGTTATCTAACAATAAGTTCGCAGGTGAGTTACCGATGGAAATCTCAGAAGCTTCTTCGTTGGTGTCAATTCAGCTAAGTTCAAATCAAATTTCTGGTCACATCCCAGAAACCATTGGCAAGTTGAAGAAACTAAACAGTCTTACTTTGAATGGAAACAATCTTTCTGGTGTTGTACCAGATTCCATTGGTTCTTGTACTTCTCTGAATGAGATAAACCTTGCTGGTAACTCTCTTTCTGGGGCTATACCAGGTAGCATCGGTTCCCTTCCAACACTCAATTCATTGAACTTGTCCTCAAACAGGCTTTCTGGTGAAATTCCATCCAGTTTATCATCTCTGAGACTTAGCCTTCTTGACTTATCAAACAATCAGTTGTTTGGTTCCATACCAGAATCTCTGTGTATTTCAGCCTTCAAAGATGGGTTCATGGGAAACCCTAGCTTATGCAGCCAGACTTTGAAAGGTATCAGACCATGTTCAATGCAATCTAGAAGCTCCAGGAGACTCCGAAACCTTTTAGTCTGTTTGGTTGCTGCTGTAATGGTTCTGCTTGGAGCATTTTTCCTCTACACAAAACTAAGGCAGAACAAGTTTGAGAAGCCACTGAAGACTACTTCCTGGGATGTCAAGCAGTACCATGTACTAAACTTCAATGAGAGCGAAATCGTTAACGGGATCAAGGCTGAGAATTTGATTGGCAAGGGAGGATCCGGAAGTGTTTATCGGGTTGTGCTTAAAGGTGGGGCAGAATTTGCAGTGAAACACATATGGACTTCAAATCTTAGTGACAGGGGAAGTTGCAGGAGCACCTCAGCTATGCTTAGGAGGAGTTCACGGTCACCAGAATTTGATGCAGAGGTGGCCACTCTTAGCTCTATAAGGCATGTAAATGTTGTGAAGCTCTATAGTAGCATCACAAGTGAAGATAGCAGTTTGCTTGTTTATGAGTTTTTACCAAAAGGGAGTTTGTGGGACAGGTTGCACACCTGTAATAAGAAGTCTGAGATGGGGTGGGAGGTTAGGTATGACATTGCATTGGGTGCTGCTACAGGATTGGAGTATCTGCACCATGGCTGTGATAGACCAGTTATACATAGGGATGTCAAATCCAGTAACATATTGCTGGATAAGGAATGGAAGCCAAGGATTGCTGATTTTGGCCTTGCCAAGATTCTAAATGGAGGAGCAGGCAACTGGACCAATGTCATTGCTGGAACACTTGGATACATACCTCCTGAGTATGCCTACACTTGTAAGGTGACAGAGAAGAGTGATGTTTACAGCTTTGGGGTAGTTCTGATGGAGTTAGTAACTGGGAAGAGGCCAATAGAGCCAGAGTTTGGAGAGAATCATGACATTGTGCATTGGGTATGCAGCACTATTAGGAGCAAAGAAGAGGCTCTTGAATTGGTGGATCCTACTATTGCAAAGCATTTCAAAGAGGATGCCATGAAGGTGTTGAGAATTGCATTATTATGCACTTCCAAAATTCCAGCTTCAAGACCGTCAATGAGAATGTTGGTTCAAATGCTGGAAGAGGCAGATCCATGCACCCCAAACAAAATGATTGTGACCATTGATGCTTAA 2907 0.4266 MIAGGIFRYGSVPIILTTALLFPCLVASSLSDERQPLMKFKSSVQSSNTSVFSSWAQENSPCLFTGIVCNFKGFVSEINLPQKQLEGTVPFDSLCELQSLEKISLGSNNLKGSISEGLRKCTNLKHLDLGVNSFNGEVPDLSSLYKLEFLNLNSSGISGVFPWKSLGNLTSLEFLSLGDNLLKENPFPLEVLKLEKLYWLYLTNCSITGNIPLGIGNLTQLQNLELSDNHLYGEIPADIVKLRKLWQLELYDNYLSGKIPVGFGNLTSLVNFDASFNQLEGDLSEVRSLKNLASLHLFENKLSGEIPKELGDLKNLTELSLYVNNLTGPLPQKLGSWEGMQYVDVSDNFLSGPIPPLLCKNNQINVLALLNNSFSGTIPETYAKCTSLIRFRLSRNSLSGVVPSGIWGLPNLVVFDLAMNQFEGPVTSDIAKAKSLARLLLSNNKFAGELPMEISEASSLVSIQLSSNQISGHIPETIGKLKKLNSLTLNGNNLSGVVPDSIGSCTSLNEINLAGNSLSGAIPGSIGSLPTLNSLNLSSNRLSGEIPSSLSSLRLSLLDLSNNQLFGSIPESLCISAFKDGFMGNPSLCSQTLKGIRPCSMQSRSSRRLRNLLVCLVAAVMVLLGAFFLYTKLRQNKFEKPLKTTSWDVKQYHVLNFNESEIVNGIKAENLIGKGGSGSVYRVVLKGGAEFAVKHIWTSNLSDRGSCRSTSAMLRRSSRSPEFDAEVATLSSIRHVNVVKLYSSITSEDSSLLVYEFLPKGSLWDRLHTCNKKSEMGWEVRYDIALGAATGLEYLHHGCDRPVIHRDVKSSNILLDKEWKPRIADFGLAKILNGGAGNWTNVIAGTLGYIPPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPIEPEFGENHDIVHWVCSTIRSKEEALELVDPTIAKHFKEDAMKVLRIALLCTSKIPASRPSMRMLVQMLEEADPCTPNKMIVTIDA 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00269 968 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Phco11g00269 968 Pfam Leucine rich repeat 459 518 IPR001611 GO:0005515
Phco11g00269 968 Gene3D Phosphorylase Kinase; domain 1 649 757 - -
Phco11g00269 968 FunFam Leucine-rich receptor-like protein kinase family protein 189 285 - -
Phco11g00269 968 SUPERFAMILY L domain-like 69 358 - -
Phco11g00269 968 Gene3D Ribonuclease Inhibitor 286 357 IPR032675 -
Phco11g00269 968 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Phco11g00269 968 SMART serkin_6 666 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00269 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Phco11g00269 968 SUPERFAMILY L domain-like 286 616 - -
Phco11g00269 968 Gene3D Ribonuclease Inhibitor 189 285 IPR032675 -
Phco11g00269 968 SUPERFAMILY Protein kinase-like (PK-like) 652 952 IPR011009 -
Phco11g00269 968 Gene3D Ribonuclease Inhibitor 358 607 IPR032675 -
Phco11g00269 968 Pfam Protein kinase domain 669 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00269 968 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Phco11g00269 968 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 26 951 - -
Phco11g00269 968 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Phco11g00269 968 ProSiteProfiles Protein kinase domain profile. 666 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00269 968 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 758 966 - -
Phco11g00269 968 FunFam Receptor-like protein kinase HAIKU2 649 757 - -
Phco11g00269 968 FunFam Receptor-like protein kinase HSL1 291 597 - -
Phco11g00269 968 FunFam Probable inactive receptor kinase RLK902 30 188 - -
Phco11g00269 968 SMART LRR_typ_2 529 553 IPR003591 -
Phco11g00269 968 SMART LRR_typ_2 481 504 IPR003591 -
Phco11g00269 968 SMART LRR_typ_2 218 242 IPR003591 -
Phco11g00269 968 SMART LRR_typ_2 97 121 IPR003591 -
Phco11g00269 968 SMART LRR_typ_2 289 313 IPR003591 -
Phco11g00269 968 SMART LRR_typ_2 169 189 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00269 Phco-Chr11 1769142 1772388 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco11g00269 Pkinase 3.9e-43 CL0016