Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00250 ATGGGTAGAGGGAAGATTGCGATTCGAAGGATCGACAACTCCACTAGCCGTCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCAAGAGAATTATCAATTCTCTGTGATGCTGAAGTTGGATTGATGGTCTTCTCCAGCACTGGCAAGCTTTATGACTATGCAAGCACAAGCATGAAATCTGTTTTTGAGCGCTACAACAAGCTAAAAGAGGAACATCATCACCTCATGAATCCGGTTTCAGAAGAGAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAGCTTCAGTACTTGCAAGAATGCCACAGGCAATTAATGGGTGAAGAACTCACGGGTTTGGGTATCAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTCTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTAACAAGTGAGATTAAAGAACTACGCCAAAAGGGAAATCTCATTCATCAGGATAATGTTGAACTCTATCAAAAAATGGACCAGATTCAAAAGGAAAATGCAGAGCTACAGAAGAAGGTTTATGGAAGCAGGAGCACAGGTGAAGAAAATGTGGCATCCAATCCTTCTTTCATGGTCAGAAATGGATATGATTTACATGCACCTATCGGTCTCCAGCTAAGTCAGCCACAGACTCAATACAGTGAATCATCAGCCAAAGTAATGAAACTCGGACTGCAGCTGCATTAG 720 0.4167 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVFERYNKLKEEHHHLMNPVSEEKFWQTEAASLRQQLQYLQECHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKGNLIHQDNVELYQKMDQIQKENAELQKKVYGSRSTGEENVASNPSFMVRNGYDLHAPIGLQLSQPQTQYSESSAKVMKLGLQLH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00250 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco11g00250 239 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Phco11g00250 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco11g00250 239 Coils Coil 120 140 - -
Phco11g00250 239 Coils Coil 163 183 - -
Phco11g00250 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco11g00250 239 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco11g00250 239 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Phco11g00250 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco11g00250 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco11g00250 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco11g00250 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco11g00250 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Phco11g00250 239 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Phco11g00250 239 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Phco11g00250 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00250 Phco-Chr11 1601147 1613804 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco11g00250 K-box 1.9e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02462 4 45759296 45769113 Phco11g00250 11 1601147 1613804 PCT