Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phco11g00250 | ATGGGTAGAGGGAAGATTGCGATTCGAAGGATCGACAACTCCACTAGCCGTCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCAAGAGAATTATCAATTCTCTGTGATGCTGAAGTTGGATTGATGGTCTTCTCCAGCACTGGCAAGCTTTATGACTATGCAAGCACAAGCATGAAATCTGTTTTTGAGCGCTACAACAAGCTAAAAGAGGAACATCATCACCTCATGAATCCGGTTTCAGAAGAGAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAGCTTCAGTACTTGCAAGAATGCCACAGGCAATTAATGGGTGAAGAACTCACGGGTTTGGGTATCAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTCTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTAACAAGTGAGATTAAAGAACTACGCCAAAAGGGAAATCTCATTCATCAGGATAATGTTGAACTCTATCAAAAAATGGACCAGATTCAAAAGGAAAATGCAGAGCTACAGAAGAAGGTTTATGGAAGCAGGAGCACAGGTGAAGAAAATGTGGCATCCAATCCTTCTTTCATGGTCAGAAATGGATATGATTTACATGCACCTATCGGTCTCCAGCTAAGTCAGCCACAGACTCAATACAGTGAATCATCAGCCAAAGTAATGAAACTCGGACTGCAGCTGCATTAG | 720 | 0.4167 | MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVFERYNKLKEEHHHLMNPVSEEKFWQTEAASLRQQLQYLQECHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKGNLIHQDNVELYQKMDQIQKENAELQKKVYGSRSTGEENVASNPSFMVRNGYDLHAPIGLQLSQPQTQYSESSAKVMKLGLQLH | 239 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phco11g00250 | 239 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Phco11g00250 | 239 | SUPERFAMILY | SRF-like | 2 | 90 | IPR036879 | GO:0003677|GO:0046983 | |
Phco11g00250 | 239 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Phco11g00250 | 239 | Coils | Coil | 120 | 140 | - | - | |
Phco11g00250 | 239 | Coils | Coil | 163 | 183 | - | - | |
Phco11g00250 | 239 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Phco11g00250 | 239 | Pfam | K-box region | 84 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Phco11g00250 | 239 | Gene3D | - | 13 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Phco11g00250 | 239 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Phco11g00250 | 239 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Phco11g00250 | 239 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Phco11g00250 | 239 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Phco11g00250 | 239 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 181 | - | - | |
Phco11g00250 | 239 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977|GO:0045944 | |
Phco11g00250 | 239 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
Phco11g00250 | 239 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phco11g00250 | Phco-Chr11 | 1601147 | 1613804 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Phco11g00250 | K-box | 1.9e-25 | No_clan |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Phco4g02462 | 4 | 45759296 | 45769113 | Phco11g00250 | 11 | 1601147 | 1613804 | PCT |