Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00229 ATGGCGAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAACGCCAGGCAAGTGACATTCTCGAAGAGGAGAAAAGGTCTTTTCAAGAAAGCTCAGGAACTGTCAACTCTTTGTGATGCTGAGATTGCTCTCATAGTCATTTCCGCCACAAGCAAGCTCTTCGAGTACGCCACTTCAAGCATGCAACAAATATTTGAAAGGCGAAATCGTCATTCAGGAGTTCAAGCATCAGACATTTCATCTACTGGACAACAGCTTGGAAGTGACTCTTTTGACATGCTGCGCAAGGAAATAGTAGATAAGACTCATGAACTGAGTCGGTTGAATGGGGAAGAGTTGCAAGGATTGACAATACAAGAACTGCAGAAACTGGAGGAACTTCTCCTCAGACGTTGGATCACTATTTCAAAAATTAAGGATGAAAAAATTACACAAGAGATCAACAGCCTTATAACCAAGGAAGCCGAACTCACGGAAGAGAACCAGAAATTGAAGCAGAAGTTGGTTCCAGAACAAAGGCAATGTTATGAGTCAATTACCAGCAGTTCATCTGATTTTCCTCCAGACAATGGCAGTTCTGACACATCCCTCAAGTTGGGAAAAAACTGCACCAAAAAAGCTGCACCAAAACTTGGTTACTGCTATGCTTCGGTGCAGATGTCGCCGTCAGCGTCATGCTTCAGACTTCAAAATAAAATAACTGAAAGGCATATTTTACGGTCAGAGTTTAACCAAGACAAACTAGACCAGTTATATCCCACGGAGCAGATTAGAAATAATCATGCTTATTTGAAGAAGGAATTGGAAGACAGGAGTCGTGAAATGAGACAACTGAATGGAGAAGAACTGCAAGGATTGAGCTTAAAGGAACTACAGAAATTAGAAGGACGACTTGACTTATCCTTGAACTGTGTTTATAAAGCCAAGGTTCAAAACATTACAAGAGAGATCACTATCCTTACTCAAAAGAGGATAAATTCTAGGAATGAAATATGTTCAGTCGAGAGACATGAGCATGAACAAGACCAGTCCTTTGACACCTCCCTCACACTGGGGCTACCTCTTCCTTCTGGCTCAAACTAG 1086 0.4153 MARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVISATSKLFEYATSSMQQIFERRNRHSGVQASDISSTGQQLGSDSFDMLRKEIVDKTHELSRLNGEELQGLTIQELQKLEELLLRRWITISKIKDEKITQEINSLITKEAELTEENQKLKQKLVPEQRQCYESITSSSSDFPPDNGSSDTSLKLGKNCTKKAAPKLGYCYASVQMSPSASCFRLQNKITERHILRSEFNQDKLDQLYPTEQIRNNHAYLKKELEDRSREMRQLNGEELQGLSLKELQKLEGRLDLSLNCVYKAKVQNITREITILTQKRINSRNEICSVERHEHEQDQSFDTSLTLGLPLPSGSN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00229 361 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco11g00229 361 MobiDBLite consensus disorder prediction 338 361 - -
Phco11g00229 361 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Phco11g00229 361 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Phco11g00229 361 ProSiteProfiles K-box domain profile. 255 345 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco11g00229 361 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Phco11g00229 361 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco11g00229 361 Coils Coil 148 168 - -
Phco11g00229 361 MobiDBLite consensus disorder prediction 346 361 - -
Phco11g00229 361 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco11g00229 361 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco11g00229 361 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco11g00229 361 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Phco11g00229 361 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco11g00229 361 Pfam K-box region 89 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco11g00229 361 Pfam K-box region 256 329 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco11g00229 361 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phco11g00229 361 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00229 Phco-Chr11 1460588 1477271 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco11g00229 K-box 7e-12 No_clan