Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00187 ATGGAAGGCGCAGCGTTGAAGGTGGAGTCCCTTGCGTGCATAGACTCAACCACTCTCTCTCACTCTGAGCTGCTCGCCCTTTCTCTCTCCTCTCTCTGCACCTTCGACCTTCGCGCCACCAATGACCTCGTCACTCCCAAGATCGACCCCGCGCTCTTCAACGAGAGCGCCGGCTCCCGCCGCCAGACCTACTCCCGCCCCCAGTCCTCCCCGACGGGCCGCCGCCGCCGCCTCGCCGGCCTCCTCCCCGCACCCAAGCTTCCTCCCCTCCCTGCTCACGACCCCGAGAACGCCGAAAACCGCCTCATCATCGACTACCTCAAACAACTCATCAGAGAGGACCCCAAGTTCGACCAGGTCCACCTTGCCCCCCCTTCACTTCCCCAACCCACCTTGAAGCGCAAGCGAGGCCGCAAGCCCAAGCTCAAACTCCATCTGGAACACTGCTACCGCGGAATCGACGTTCTTAACCGAAACGGCGTCGCCGTTGATCTCTCGCAATTGGCCACCTCCCAAGACCCCTTCGCTTATGAGCTCAAGAGACGCACAGAGGGCTTGAGCAATGAAGAGGAGCTGTTAGGGTTTTTGAGGGATTTGCCTGGCCAGTGGGGGAGCCGTAGGAAGAAGCGGAGGATTGTTGATGCTGCGGATTTCGGCGATGTGTTGCCGCTCAGTTGGAAGATTCTTCTCGGTTTAAAGAGGAAGGACGGTCGTGCCTGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCACTTTGTGTCTTGCAAAGAGGTTTCTTCGTATTTACAGTCTCTTCTGGGTAATGGTGATGCACAGTCGCAAAGTAGTCGTAGGAGTGAAAATGTGGTGCAGGAACAGATAGTGCCTGCTGAAAATTCTGCTGGTGTCACTCCTGAACGTCAAGATCAGAGGCAGATTATTGCCGTGAACACGGAGGTGCCTGGTTTGTTTGCGGCTGCTAATGAACGAGTGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTTGCAGATGTGCAGATTCATGATCTGTTTGAATGTCGCAAGTGCAATATGAGTTTTGACGAGAAGGATTCGTACTTGCGACACCTGTTGTCGGTTCACCAGAGGACGACAAGGCGGTACCGGCTCGGTTCGTCTGTTGGAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTAGAAAGGCGTCGCTACAATGGTCATGTGGGGATTCATGTTAGGAATTATGTGAGGAGGGTCGAAGATTCACCAGGTCAGATAAATGTCCAGAGGACAGATGACAAGTCTCCAGTCAGGGAGGACGTGCCTTTAAGAATATCTAAGATGGATGCCCTAATTGAAATTGCTCAAAACTCTATCATGGAGGGTTCTGTCACGGAACCCCATCATTTAGCTAAACTGAATGAGATTCCTCCTTCGGATATTGCTGTTGGTTACTCGGACCACCACGGAAAAGAGTCTCCAATCAGTGAAAAGCAGATGGAAGATAGCTTGACTAGAAAAGATGTGGATCATCATAATATGGATGGAAAGGTAGAGGAAATTGATGATGATAACCATGTGATAGATGTAAAAATGGTTACTTTTCTTGATAACATGGGTTTGTTATCTGTAAATAAGCAAGATGTTAAAGCATTGGAGACTTCTGACGCAAAAGATGATGTGGAATTGACTATTGAGGAACTGGATCAATCTGGGATTGATTTGGATGGTGTTACTGAAGTTCGTTTACTTCCTTTATCTGAAGTTAACATGATACCGGAATCTGAAAAGAGTGAAAATTCTGGATGTTCTAATACAAGGGTTCAGTTTAAACTTGATGAAGACATTAGTAACAAGAGTGAGTTGGAATTTGGTTTAAATTGCTTGAAGGATGTACCTGTTACCGTTAGCACTAATGTCCAAGAGATGGGAATGGCAGCTTCTGAAGAAAATGTGCTACATTCTAGGGCTTTTAACTCCTCTATATCTACAGAACAATCTTTGGATTGTTTGCCTGCATTCAGCTCTGATAAGGGAGGAAAACAGTTTTGCAGTCTTGACAATGAATATGATAATGTGAAGGGTCTCCAGGAATTGAGGTTTGATGAAATAGATAATGTTGATTATGATTTTGCAAGGGTTCAGGATTCTCCTTCTCTGCCTTCTGTATCAACTGAATTGGCCAATAACAGAGTGATGGAAGAGACGTATGCATCCTCAGTTCAGTTTGAATCACAGGAGGGTATGCTAAATATTGGTGGCAGAGATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGACGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAAGCAAAAATCTCTGGTCAAATGAACGTGTTGGACTGTGAATAG 2427 0.4714 MEGAALKVESLACIDSTTLSHSELLALSLSSLCTFDLRATNDLVTPKIDPALFNESAGSRRQTYSRPQSSPTGRRRRLAGLLPAPKLPPLPAHDPENAENRLIIDYLKQLIREDPKFDQVHLAPPSLPQPTLKRKRGRKPKLKLHLEHCYRGIDVLNRNGVAVDLSQLATSQDPFAYELKRRTEGLSNEEELLGFLRDLPGQWGSRRKKRRIVDAADFGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLGNGDAQSQSSRRSENVVQEQIVPAENSAGVTPERQDQRQIIAVNTEVPGLFAAANERVKEVALLGIENLADVQIHDLFECRKCNMSFDEKDSYLRHLLSVHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEDSPGQINVQRTDDKSPVREDVPLRISKMDALIEIAQNSIMEGSVTEPHHLAKLNEIPPSDIAVGYSDHHGKESPISEKQMEDSLTRKDVDHHNMDGKVEEIDDDNHVIDVKMVTFLDNMGLLSVNKQDVKALETSDAKDDVELTIEELDQSGIDLDGVTEVRLLPLSEVNMIPESEKSENSGCSNTRVQFKLDEDISNKSELEFGLNCLKDVPVTVSTNVQEMGMAASEENVLHSRAFNSSISTEQSLDCLPAFSSDKGGKQFCSLDNEYDNVKGLQELRFDEIDNVDYDFARVQDSPSLPSVSTELANNRVMEETYASSVQFESQEGMLNIGGRDQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQMNVLDCE 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00187 808 ProSiteProfiles Zinc finger C2H2 type domain profile. 346 374 IPR013087 -
Phco11g00187 808 Gene3D Classic Zinc Finger 336 418 - -
Phco11g00187 808 MobiDBLite consensus disorder prediction 54 76 - -
Phco11g00187 808 SUPERFAMILY DNA-binding domain 218 266 IPR016177 GO:0003677
Phco11g00187 808 SMART c2h2final6 346 369 IPR013087 -
Phco11g00187 808 SMART c2h2final6 393 415 IPR013087 -
Phco11g00187 808 MobiDBLite consensus disorder prediction 56 72 - -
Phco11g00187 808 ProSitePatterns Zinc finger C2H2 type domain signature. 395 415 IPR013087 -
Phco11g00187 808 ProSitePatterns Zinc finger C2H2 type domain signature. 348 369 IPR013087 -
Phco11g00187 808 ProSiteProfiles Zinc finger C2H2 type domain profile. 393 420 IPR013087 -
Phco11g00187 808 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 597 IPR037472 -
Phco11g00187 808 SUPERFAMILY beta-beta-alpha zinc fingers 345 415 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00187 Phco-Chr11 1226627 1230508 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco11g00187 None None None