Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00182 ATGTTTGAGAGAGTACATCCAGTCTTCGCCATGGCGGAGGGAGCTGCTTATGGATTGCGTCGTCCATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCAAATCACTTCAGAACCTCATAACAGGCCACCAAGTGGCTCACTTTTTCTATTTGATAGAAAAGTTTTGAGATACTTTAGAAAGGATGGACATAATTGGAGAAAGAAAAGGGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTGCATTGCTACTATGCCCATGGAGAAGATAATGAAAATTTTCAAAGGCGAAGCTACTGGATGCTTGAACCGGATATGATGCACATAGTATTTGTCCATTACTTGGAAGTTAAGGGTAACAAAAATATTGTAGTGAATACCGAAGGTGATGAGGTCCCACAGGATTCCCAAAAGGTTACTTCACTTAGCACAGATTCTGTCAGCCCATCAACCAGTTTGATGTCTTTACGTGAAGATGCTGATTCTGAGGATATCCACCAAATTAGTTCCGGGTTGCGGCCATTACATGAGTCACAACAAATGGGGAATGGTCCATTGGCAGAAAAGATTGATGATGGTGTGAACAGTTCATATCATATGCATTCCTTTTCAGGTGATCATGGACAGTCATCAATTTCTGGAACAGATTATATCCCAGTTGTTCATGGGGATAAATTTAGAGGAAATGACACTACGTATTTTGGTGAGAAAACACATGGCGTGGCACCATGGGACACTGTCTTGGAAAGCACTGCCAATTTGCATAATGATCCTTCTCTTGCATCATTTCCTTCGATCCCCTCTAGTTCAATGGGTAGTGTCCTTGAACAAGAACATACCATTTTTGGTGACCTTTTAACAGGCAAAAGAGATCTCACTGAGGAAGCAGAGAGCTCTCACTCTTTCCAATCGAGTTGGCAGATTCCTTTTGAAGACAATTCGGGAAATATGCCAATGTCGACCCAAACCCCCCAATCATTTGGTCTGCAATTTGGATCTGATTATGGCACCAGTTCACTAGGGTATGAAACTCGTAATACGAGTTCTGAAATTGCTCCAATCCTGTACAGTTTTCATGGTGATCCAAAAGAGCAGCTCATGCAGAAAAACTATCCACAAGAGCATGCAGACGGACAATCTCAACATACTCTAAAATCCAATTCTGCAATTAAAGTTTCTGATGAAGAATCTGTCAACTATAGCTTAAATGTGAAACGCACACTATTGGACAAAGATGAGAGCCTGAAGAAGGTTGATAGTTTCTCTAGGTGGGTTACTAAAGAACTTGGAGAGGTGGCTGATTTGAATATGCAGTCCACACCTGGTATTTCTTGGAGTACAGATGAATGCCAGCATGTGATAGATGATAGCTCATTGAGTCCATCTCTCTCTCAGGACCAACTGTTTAGTATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTTAGATATTGAGGTGTTGATTATTGGATCATTTTTTAAGAGTCAATCGGAGGTGACGACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCAGCTGAGGTTTTAGCTGATGGAATTTTGTGCTGTCAAGCTCCTCGTCATAAAGTTGGACGGGTCCCATTCTATGTAACATGTTCCAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTTGATTTCAGAAAAGACTTTGCTAGAAATGTAGATTTTGCAGAATATTTTGGCAGTTCAACTGAAATGCTGCTTCATATGCGACTGGAGAATTTTCTTACTTTAAAGCCAGTGAACCCTTCAAACCATTATTTTGAGGGCGATATGGAGAAAAGGAATTTAATTTTCAAGCTTATTTCACTGAGAGAGGAAGAGGAATACACCATTAAGGACGAACCAAATACAGAATTGGATATATCCAAACACGTGGTGAGGGAGCATCTTTTTCACAGGCAGATTAAAGAGAAGCTGTACTCATGGCTTCTTCACAAAGTAACTGAGAGTGGTAAAGGGCCAAATGTATTAGACGTGGATGGCCAAGGTGTGCTACACTTAGCAGCTGTTCTTGGTTATGATTGGGCCATAAATCCAATTATATCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGTCAGCTCTTCACTGGGCTGCATTCTGTGGCAGAGAGCGGACAGTTGCTTTCCTGGTCTCCATGGGAGCAGATTGTGGAGCACGGACAGATCCATCTCCTGCATTTTTGTCTGGTAGAGAAGCTGCAGATCTTGCCTCTGTAAACGGGCACAAAGGAATCTCTGGTTTTCTTGCTGAGTGTTCATTAACTCACAAACTTGAAACCATCACAATGGATGATAAAAAAGGTGGTCAACAAGAAATTTCAGGAATGAAAGGGGTGCAGACAGTTTCAGAACGAACTGCAACACCTGTGCTCTGTGGTGATATGCCAGATGCCCTCTGTCTCAAGGATTCGCTTATTGCTGTGCGTAATGCAACACAAGCCGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGTATGAAGGGGATGATGAGCTTGGATTGTTAGATCAGCAAGCTCTATCTCTTCTAGCTTCTAGGGCTTGCAAATCTGGACAACGAAATGGTTTAGCCAATGCTGCTGCAATACAGATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATGATTCGCCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTACGGAAACAGTATAAACCAATCATCTGGTCTGTGGGAATCCTAGAGAAAATCATATTACGTTGGAGGCGCAAGGGTAGTGGTTTACGTGGATTTCGATCAGACGCGCTTAATAAAGTCCCCAGTCAACAAAATGATTCTCCGAGAGAAGATGATTATGATTTTCTCAAGGAGGGACGGAAACAAAAGGAAGAAAATATCAAAAAGGCCTTATCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGCGCCCAATACCGGCGTCTGCTAAATGTTGTCGAGGACTTCCGTCAAACCAAGGGAACTAAGGAGGGTTTGACCAGTTCTGAAGAAGGGACAGTTGATGGTGTGGAGGATTGGATTGATATTGATATGCTTTTAGACGATGACAATTTCATTCCTATGGCATTTAACTCATCCTGA 3264 0.4182 MFERVHPVFAMAEGAAYGLRRPLDIQQLQFEAQHRWLRPAEICEILRNYRMFQITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNENFQRRSYWMLEPDMMHIVFVHYLEVKGNKNIVVNTEGDEVPQDSQKVTSLSTDSVSPSTSLMSLREDADSEDIHQISSGLRPLHESQQMGNGPLAEKIDDGVNSSYHMHSFSGDHGQSSISGTDYIPVVHGDKFRGNDTTYFGEKTHGVAPWDTVLESTANLHNDPSLASFPSIPSSSMGSVLEQEHTIFGDLLTGKRDLTEEAESSHSFQSSWQIPFEDNSGNMPMSTQTPQSFGLQFGSDYGTSSLGYETRNTSSEIAPILYSFHGDPKEQLMQKNYPQEHADGQSQHTLKSNSAIKVSDEESVNYSLNVKRTLLDKDESLKKVDSFSRWVTKELGEVADLNMQSTPGISWSTDECQHVIDDSSLSPSLSQDQLFSINDFSPKWAYAELDIEVLIIGSFFKSQSEVTTCNWSCMFGEVEVPAEVLADGILCCQAPRHKVGRVPFYVTCSNRLACSEVREFDFRKDFARNVDFAEYFGSSTEMLLHMRLENFLTLKPVNPSNHYFEGDMEKRNLIFKLISLREEEEYTIKDEPNTELDISKHVVREHLFHRQIKEKLYSWLLHKVTESGKGPNVLDVDGQGVLHLAAVLGYDWAINPIISAGVNINFRDVNGWSALHWAAFCGRERTVAFLVSMGADCGARTDPSPAFLSGREAADLASVNGHKGISGFLAECSLTHKLETITMDDKKGGQQEISGMKGVQTVSERTATPVLCGDMPDALCLKDSLIAVRNATQAADRIHQVFRMQSFQRKQLTQYEGDDELGLLDQQALSLLASRACKSGQRNGLANAAAIQIQKKFRGWKKRKEFLMIRQRIVKIQAHVRGHQVRKQYKPIIWSVGILEKIILRWRRKGSGLRGFRSDALNKVPSQQNDSPREDDYDFLKEGRKQKEENIKKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKGTKEGLTSSEEGTVDGVEDWIDIDMLLDDDNFIPMAFNSS 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00182 1087 ProSiteProfiles IQ motif profile. 931 955 IPR000048 GO:0005515
Phco11g00182 1087 SMART ANK_2a 732 761 IPR002110 GO:0005515
Phco11g00182 1087 SMART ANK_2a 699 728 IPR002110 GO:0005515
Phco11g00182 1087 FunFam Calmodulin-binding transcription activator 2 907 955 - -
Phco11g00182 1087 Pfam IPT/TIG domain 499 573 IPR002909 -
Phco11g00182 1087 Pfam Ankyrin repeats (3 copies) 680 762 IPR002110 GO:0005515
Phco11g00182 1087 Gene3D Immunoglobulins 492 588 IPR013783 -
Phco11g00182 1087 ProSiteProfiles Ankyrin repeat profile. 732 764 IPR002110 GO:0005515
Phco11g00182 1087 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Phco11g00182 1087 SMART CG_1_2 28 146 IPR005559 GO:0003677
Phco11g00182 1087 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515
Phco11g00182 1087 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 1046 - -
Phco11g00182 1087 Pfam IQ calmodulin-binding motif 910 928 IPR000048 GO:0005515
Phco11g00182 1087 Pfam IQ calmodulin-binding motif 933 952 IPR000048 GO:0005515
Phco11g00182 1087 Gene3D - 667 805 IPR036770 -
Phco11g00182 1087 MobiDBLite consensus disorder prediction 158 179 - -
Phco11g00182 1087 Coils Coil 999 1019 - -
Phco11g00182 1087 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Phco11g00182 1087 SUPERFAMILY E set domains 499 584 IPR014756 -
Phco11g00182 1087 Gene3D - 908 954 - -
Phco11g00182 1087 ProSiteProfiles Ankyrin repeat region circular profile. 732 758 - -
Phco11g00182 1087 SMART iq_5 930 952 IPR000048 GO:0005515
Phco11g00182 1087 SMART iq_5 907 929 IPR000048 GO:0005515
Phco11g00182 1087 FunFam Calmodulin-binding transcription activator 2 492 588 - -
Phco11g00182 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 897 958 IPR027417 -
Phco11g00182 1087 ProSiteProfiles IQ motif profile. 908 937 IPR000048 GO:0005515
Phco11g00182 1087 SUPERFAMILY Ankyrin repeat 683 793 IPR036770 -
Phco11g00182 1087 MobiDBLite consensus disorder prediction 979 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00182 Phco-Chr11 1184594 1197144 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Phco11g00182 CG-1 2.1e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02394 4 45091048 45101678 Phco11g00182 11 1184594 1197144 PCT