Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00161 ATGGAGAGACTGACTTCATCTTTTACGAGTTCCTTTTTTGTTTGGGCAATTTTGGTGCTTGATTTGGTACTTAAGGCTTCTGGAAATCAGGAAGGCGATGCCCTGAATGCATTGAAGAGCAACTTGCTTGATCCTAACAACGTTCTTCAAAGCTGGGATGCTACTCTTGTCAATCCCTGCACTTGGTTTCATGTTACTTGCAATAGTGATAACAGTGTGACCCGTGTTGATCTTGGAAATGCAGAACTTTCTGGTCAACTGGTTTCACAACTTGGTCAGCTCACAAATTTACAGTACTTGGAACTTTATAGTAATAATTTAAGTGGAAAAATTCCAGAGGAGCTTGGGAACTTGACAAACTTGGTGAGCTTGGATCTGTACTTGAACAATTTAACTGGTCCCATACCGACTACGCTGGGAAACCTTGCAAAACTACGTTTCCTGCGTCTCAACAATAATACCTTGACGGGAGGCATACCCATGTCTTTGACAAATGTTTCTTCTTTGCAAGTTCTTGATCTCTCGAACAACCATCTACGGGGTGAAACCCCAGTGAATGGTTCGTTTTCATTATTTACCCCTATCAGTTATCAAAATAATCCTGACTTGATACCTCCAAAAAACGCTCCATCTCCAGTTTCTCCAACACCACCACCAGCTTCTTCAGGAAATAGTAACACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAAAAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCCGAGGAGGATCCTGAAGTTCACCTTGGTCAACTTAAAAGGTTTTCGCTACGTGAGCTGCAAGTTGCCACAGATAACTTTAGTAACAAACACATTTTGGGTAGGGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGATCTCTCGTAGCAGTGAAAAGACTTAAAGAGGAACGTACACAGGGTGGGGAGCTCCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTTTGTATGACTCCTACTGAACGATTGCTTGTGTATCCTTACATGGCTAATGGAAGTGTAGCTTCATGTTTACGAGAGCGTCAAGAATCTCAACCACCACTTGGCTGGCCAGAACGGAAGCGTATTGCTTTGGGATCTGCAAGGGGACTTGCTTATTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCAGCAAATATTTTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAACTTATGGATTATAAAGATACTCACGTTACTACTGCTGTACGTGGAACAATTGGACATATAGCTCCTGAGTACCTTTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTCATAACTGGACAAAGGGCTTTTGATCTAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTGGTAGACGCAGATTTAGTGGGCAATTATATTGACGAGGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGCTCTCCTATGGAAAGACCAAAGATGTCTGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCCGAGAAATGGGAGCAATGGCAGAAAGATGAGACATTCCGGCAAGACTTCAACAACAACATTCATCACCCCAATGCTAATTGGATAGTAGATTCAACTTCTCACATCCAAGCAGATGAACTGTCAGGTCCTAGATGA 1851 0.4273 MERLTSSFTSSFFVWAILVLDLVLKASGNQEGDALNALKSNLLDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNAELSGQLVSQLGQLTNLQYLELYSNNLSGKIPEELGNLTNLVSLDLYLNNLTGPIPTTLGNLAKLRFLRLNNNTLTGGIPMSLTNVSSLQVLDLSNNHLRGETPVNGSFSLFTPISYQNNPDLIPPKNAPSPVSPTPPPASSGNSNTGAIAGGVAAGAALLFAAPAIALAYWRKRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERQESQPPLGWPERKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDRKLETLVDADLVGNYIDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKDETFRQDFNNNIHHPNANWIVDSTSHIQADELSGPR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00161 616 CDD STK_BAK1_like 298 569 - -
Phco11g00161 616 FunFam Somatic embryogenesis receptor kinase 1 261 368 - -
Phco11g00161 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Phco11g00161 616 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Phco11g00161 616 Pfam Protein kinase domain 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00161 616 FunFam Somatic embryogenesis receptor-like kinase 1 369 586 - -
Phco11g00161 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 577 - -
Phco11g00161 616 SUPERFAMILY L domain-like 30 194 - -
Phco11g00161 616 Gene3D Ribonuclease Inhibitor 27 210 IPR032675 -
Phco11g00161 616 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Phco11g00161 616 FunFam Somatic embryogenesis receptor kinase 1 27 213 - -
Phco11g00161 616 SUPERFAMILY Protein kinase-like (PK-like) 271 567 IPR011009 -
Phco11g00161 616 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Phco11g00161 616 Gene3D Transferase(Phosphotransferase) domain 1 369 586 - -
Phco11g00161 616 ProSiteProfiles Protein kinase domain profile. 292 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00161 616 MobiDBLite consensus disorder prediction 205 219 - -
Phco11g00161 616 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Phco11g00161 616 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00161 616 MobiDBLite consensus disorder prediction 201 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00161 Phco-Chr11 1045547 1050568 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phco11g00161 Pkinase 3.7e-45 CL0016