Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00154 ATGGGAGACACCAATGTCAACCTTCCACCAGGCTTTCGATTCTATCCCACAGATGAAGAGCTTGTAGTCCATTTCCTTCACAGAAAAGCCTCACTTTTGCCTTGCCACCCTGATGTCATCCCTGATCTTGAGGTCTACCAATATGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGAAACCAATGGTACTACTACAGCAGAAGGACACCAAATAGGGTCACTGGCAATGGGTATTGGAAACCAACGGGAATGGAAGAGCCAGTGGTTTCAAGCTCAAACAGCAAGAGAGTTGGCATGAAGAAATATTTTGTGTTTCATGTAGGAGAAGCCGCTACTGGTATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCCTCTACCAGATCATCCAAAAGAAAACCTCAACCAAAAGCAGATTACAATAAATGGGTGATATGTCGTGTTTATGAGCGTAATGGAGAGGATGACAATGGAACAGAGCTCTCATGTTTGGATGAAGTATTCTTGTCATTGGATGATGATCTTGATGAAATAAGCTTACCAAATTAG 570 0.4246 MGDTNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYQYDPWELDGRALAEGNQWYYYSRRTPNRVTGNGYWKPTGMEEPVVSSSNSKRVGMKKYFVFHVGEAATGIKTNWIMQEYRLSDSASSTRSSKRKPQPKADYNKWVICRVYERNGEDDNGTELSCLDEVFLSLDDDLDEISLPN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00154 189 PANTHER NAC TRANSCRIPTION FACTOR 56 8 164 - -
Phco11g00154 189 FunFam NAC domain-containing protein 104 17 161 - -
Phco11g00154 189 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Phco11g00154 189 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Phco11g00154 189 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Phco11g00154 189 SUPERFAMILY NAC domain 6 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00154 Phco-Chr11 994647 995784 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco11g00154 NAM 9.5e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02362 4 44732928 44734145 Phco11g00154 11 994647 995784 PCT