LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco11g00133	ATGTCATTCCGCAGCATAGTTCGTGATGTGAGGGATAGTTTTGGGAGCTTGTCCAGGCGTAGTTTTGATCTCAGACTTACGGGTCATCATAGAGGAAAATCTCAAGGATCGGTGCAGGATTTGCATGACCAACCTCTAGTGATTCAAAATAGCCGCTGGGCGAGCTTACCCCCAGAATTGCTATTTGATATCATTAGACGGCTCGAGGAGAGTGAGAATACATGGCCTTCTCGAAAGCACGTTGTTGCATGTGCTGCCGTTTGCCAGTCTTGGAGGAACATGTGCAAAGAAATTGTTAAGAGCCCAGAGTTCTGTGGCAAACTTACATTCCCCTTGTCCTTGAAGCAGCCTGGACCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTCTGTCTCAGCCCTGCTTTGTTGGTTGAAAATGGGAAATTCCTCCTTTCTGCTAAGAGGACAAGGAGAACAACTTACACTGAGTATGTTATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAACACCTACATTGGAAAGCTGAGATCAAATTTTCTTGGTACAAAATTCATTATAAATGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCCGGGACTGGGAAGACGAGCCGCAGATTTTATTCAAAAAAGGTCTCGCCTAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAATTAAATGTGCTTGGGACTAGAGGCCCCAGAAAGATGCACTGTGTCATGCACTCGATACCGGCTTCAGCACTGGATGCAGGTGGCACTGTTCCAGGCCAGCCAGAGCTTCTTCCCCGTGCCCTGGAGGACTCATTTCGGAGCATCTCATTTTCGAAGTCTCTAGATCGCTCTTTCGAGTTCAGTAGTTCACGGTTTTCTGAGATTGGGGAATCCTGTCTCGAGGATGATGATGGCAAGATGAGACCCTTGGTTCTAAAAAACAAGCCTCCAAGGTGGCATGAACAGTTACAGTGTTGGTGCCTTAATTTTCGCGGCCGAGTAACTGTTGCGTCTGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCAGCTGCGGGTGCACCTACGCCCTCTCAACCGGCTCCACCAGAACATGATAAGATAATTCTTCAGTTTGGCAAAGTTGGGAAAGACATGTTCACCATGGATTATCGGTACCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA	1284	0.4564	MSFRSIVRDVRDSFGSLSRRSFDLRLTGHHRGKSQGSVQDLHDQPLVIQNSRWASLPPELLFDIIRRLEESENTWPSRKHVVACAAVCQSWRNMCKEIVKSPEFCGKLTFPLSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIINDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPASALDAGGTVPGQPELLPRALEDSFRSISFSKSLDRSFEFSSSRFSEIGESCLEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE	427

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco11g00133	427	SUPERFAMILY	F-box domain	49	97	IPR036047	GO:0005515
	Phco11g00133	427	ProSitePatterns	Tub family signature 1.	349	362	IPR018066	-
	Phco11g00133	427	PANTHER	TUBBY-RELATED	29	425	-	-
	Phco11g00133	427	Gene3D	-	48	101	-	-
	Phco11g00133	427	Pfam	Tub family	114	422	IPR000007	-
	Phco11g00133	427	PRINTS	Tubby superfamily signature	384	403	IPR000007	-
	Phco11g00133	427	PRINTS	Tubby superfamily signature	237	264	IPR000007	-
	Phco11g00133	427	PRINTS	Tubby superfamily signature	331	348	IPR000007	-
	Phco11g00133	427	PRINTS	Tubby superfamily signature	349	365	IPR000007	-
	Phco11g00133	427	PRINTS	Tubby superfamily signature	169	185	IPR000007	-
	Phco11g00133	427	PRINTS	Tubby superfamily signature	185	209	IPR000007	-
	Phco11g00133	427	PRINTS	Tubby superfamily signature	405	427	IPR000007	-
	Phco11g00133	427	Pfam	F-box domain	53	100	IPR001810	GO:0005515
	Phco11g00133	427	Gene3D	Tubby Protein; Chain A	113	421	IPR025659	-
	Phco11g00133	427	FunFam	Tubby-like F-box protein	110	427	-	-
	Phco11g00133	427	ProSitePatterns	Tub family signature 2.	412	427	IPR018066	-
	Phco11g00133	427	SUPERFAMILY	Tubby C-terminal domain-like	102	427	IPR025659	-
	Phco11g00133	427	CDD	F-box_AtTLP-like	53	97	-	-
	Phco11g00133	427	FunFam	Tubby-like F-box protein	48	101	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco11g00133	Phco-Chr11	846815	849457	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Phco11g00133		Tub	4.1e-116	CL0395

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco11g00133	11	846815	849457	Phco11g00133	11	846815	849457	ECH