Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00113 ATGGTGAAGAAAGGTCCATGTTCGCATTGCAGGATTAATTCTACACCACTTTGGCGTAATGGACCAGCTGAGAAACCTGTGTTGTGCAACGCTTGTGGATCACGATACAAGTTGAAAGGGCACCTTGAGAATTATCTCCCCAAACACCACAAGAACTATGACGAAATTCATCTCAATGTTGAAGACCAACTTTCAGCACATAATGGAAGCAGCAATGAATCAAGCCCAGATTTCCATTATGAATCAGAACAAGATTTTGGGAACAACATCCCTACAAGGAAACGGTCACGGGTGGTGTACAGGCAGATGACACCATTGGAGAGGTTTCAAAAGCGGCTTCTGAGTTTGTATAGAAGTGAAAAGCAACCAAAGGAGAGATTCCCAGAAGAGGATATATTGGTGGATAACGTCAACAACTTCATACCCACCACTGAAATAGGACTTGGACTCGTTCTTCTAAGACAGATCCGGGATCATTCAGATTTTCATTTCTGA 495 0.4283 MVKKGPCSHCRINSTPLWRNGPAEKPVLCNACGSRYKLKGHLENYLPKHHKNYDEIHLNVEDQLSAHNGSSNESSPDFHYESEQDFGNNIPTRKRSRVVYRQMTPLERFQKRLLSLYRSEKQPKERFPEEDILVDNVNNFIPTTEIGLGLVLLRQIRDHSDFHF 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00113 164 CDD ZnF_GATA 6 57 IPR000679 GO:0006355|GO:0043565
Phco11g00113 164 PANTHER OSJNBB0038F03.10 PROTEIN 7 155 IPR044589 -
Phco11g00113 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 45 - -
Phco11g00113 164 Gene3D - 3 75 IPR013088 GO:0006355|GO:0008270
Phco11g00113 164 MobiDBLite consensus disorder prediction 66 93 - -
Phco11g00113 164 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Phco11g00113 164 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Phco11g00113 164 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Phco11g00113 164 SMART GATA_3 1 56 IPR000679 GO:0006355|GO:0043565
Phco11g00113 164 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00113 Phco-Chr11 734659 739006 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco11g00113 GATA 7.1e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02284 4 43691991 43699168 Phco11g00113 11 734659 739006 PCT