Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00083 ATGGAAGTTGGAACAAATTCAAAGGTTTATCATGGCTTCGACTTAAACATTCCATATGTGAAGAAGGACTTTGATGTGAACCCTCAAAACGACTCTTCATCTCTCATTATCATCAGTACTCACCATGCATCTCCACATAACACTCGAAACATAGAGGAGAATGAGGTTCAGCATGCTGCTGAAGTGGAAACAAGTAATGGAGCAAGTTCTGGTGCTGAAGGTGTTATCTCTGAAGTTCAACCTCGGTATATTGCCTCTGTCTTTGCAACACCAAGTAGAGGCCGCCGCCGCTGCCACCACCATCATCATCACGGTGGAGATGCTAAGCAGATCAGTGATCAAGGTAGATTCTGCACAAATTTTATGTGTAGGACAAGAAGAACTCCCATGTGGCGCAAGGGACCTCTGGGACCAAAGACTCTCTGCAATGCTTGTGGCCTTCAATACATTAAGACTGTGAAGAGTAGAGGCAATACAGTTTCAGGTGCAGGTGGTGCTTCTTCCACTGTCCATGGAGATGATGATGATGATGATGGTGGTGGTGGTGCTTTTCATGGTCCTGTCCCACCTGAAACAGTGGAAGGAGAAAATCTCTAA 597 0.4539 MEVGTNSKVYHGFDLNIPYVKKDFDVNPQNDSSSLIIISTHHASPHNTRNIEENEVQHAAEVETSNGASSGAEGVISEVQPRYIASVFATPSRGRRRCHHHHHHGGDAKQISDQGRFCTNFMCRTRRTPMWRKGPLGPKTLCNACGLQYIKTVKSRGNTVSGAGGASSTVHGDDDDDDGGGGAFHGPVPPETVEGENL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00083 198 Pfam GATA zinc finger 122 151 IPR000679 GO:0006355|GO:0043565
Phco11g00083 198 CDD ZnF_GATA 117 157 IPR000679 GO:0006355|GO:0043565
Phco11g00083 198 Gene3D - 112 160 IPR013088 GO:0006355|GO:0008270
Phco11g00083 198 PANTHER OS01G0976800 PROTEIN 66 157 - -
Phco11g00083 198 MobiDBLite consensus disorder prediction 157 198 - -
Phco11g00083 198 ProSiteProfiles GATA-type zinc finger domain profile. 112 149 IPR000679 GO:0006355|GO:0043565
Phco11g00083 198 SMART GATA_3 112 165 IPR000679 GO:0006355|GO:0043565
Phco11g00083 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 113 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00083 Phco-Chr11 523773 525455 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco11g00083 GATA 3.1e-12 CL0167