Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00082 ATGATGATGTTGCTACCCTTGATGTTTGCAGTGTTTTCTTCCACGAGTTTGAGTTCGGCAGCACCCTCTCCATCCACAACACCCACATGCCCCATGGACTTGAATTATGTGCTGAGAATCCCATGGAACACTTCTGCTTGTCACAACTTCCAACAACCTTTGGCAGCAAAAAATGGAACAGATGCTAACACTTGTTGCATATCACTGTTGTCCCTCTTTGGCGTGGGACTTGCACAGCATCTCAAAGAGACTTCTCAGTTCCAACTCCCCAACCTTGCCACCTCAGTTTCATGCATCCTAGACTTCCAATCTAAGCTCTCCACCCTTTCTCTCCCCAACAACCTTGCCGACTCTTGCTTTGACCCCCTTCAGTTTGTGATCTCCCCCAACATCTGTGCTGGGATTCAAACCATCTCTGATTGGACCAAAAAGCTTGGTCAGTCCACACCACTCAACACTGCTTGCAAACCGGATCTCACTGATCTCTCCCGCTGTGATGTGTGTCTGGGAGCTGGGTTACAGGTCAAGCAGGAGCTTATTTCAATAGATGGTAATGCTTCACATTCCATAGATTGTTTTTACTTTTCCATTCTCTATGCTGCTGGGATTGTGAATGAGTTTGGACCTGAAAGCAATGGTGCTGTGACTTGTATTTTTAGCATGTCGGTTTATTCACAGGGGGGTTCCGGGGCAAAGAATCACCAGGCTCTTGTGTTTGGGTTGACAGGAGCTGGGGTGGCTTTGCTGGTGATGTCTTCTCTGTTGGGGCTTTATGTATGGTACGACAGGAAGCACAGGAGGAAAAAGCTTGAGACTTTTCAGTTTGATTTTGACCCTGAGGAACAAGGGTCTAGGCGTAGATTGAGGCCCAATACGGGGTCCATTTGGTTCAAAATTGGGGAGCTTGAGAAGGCCACTGATAGTTTTTCATCTAAGAACTTCATTGGGCGAGGTGGGTTTGGGTTGGTTTTCAAGGGAACCTTGGCTGATGGGACTGTTGTAGCGGTTAAAAGGATCTTGGAATCTGATTTTCAAGGAGATATCGAGTTTTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCACCGGAATCTGGTGCCTTTAAGAGGCTGTTGTGTGGCTGAGGAGAATGAGAATTATGATGAAAGGGGAAGCCAAAGGTATCTTGTGTATGATTACATGCCAAATGGGAACCTGGAGGACCATCTCTTTGTATCATCGGACTCTCAGAAAGCAAAGGGGTCATTGACATGGCCTCAGAGGAAAAGCATAATCTTGGATGTGGCAAAGGGGTTGGCCTATTTGCACTATGGAGTTAAACCTGCAATTTTCCACAGGGATATCAAGGCCACCAATATACTACTTGATGTGGATATGAGGGCAAGAGTTGCTGATTTTGGTCTTGCCAAACAAAGCCGGGAGGGTCAATCTCATCTCACTACCAGAGTGGCTGGAACTCATGGATATCTAGCCCCGGAATATGCACTCTACGGTCAGCTCACTGAGAAGAGTGATGTTTATAGTTTTGGTGTAGTTGTTCTGGAGATTATGTGTGGGAGGAAGGCTCTTGACTTGTCTTCATTAGGATCACCAAGGGCATTCTTGATCACAGATTGGGCTTGGTCACTAGTGAAGGCTGGGAAGTTAGAAGAGGCACTAGATGGTTCCCTGGTGAAGGATGAGAACTTTCCTAGCTCAAATCCTAAGAGCATAATGGAGAGGTTTTTGCTGGTGGGGATTCTATGCTCCCATGTGATGGTTGCTCTGAGGCCAACAATTGCTGATGCTCTGAAGATGTTGGAAGGTGATGTTGAGGTTCCACAAATCCCAGATCGCCCTATGCCTCTTGGCCACCCTACCTTTTATAATGATGGCAGTACTTTTAGCATATCTCCAGCATTAAGTGGCCCCAAGTTGCAAACTGGAGACATGCTCAGGTAA 1941 0.4652 MMMLLPLMFAVFSSTSLSSAAPSPSTTPTCPMDLNYVLRIPWNTSACHNFQQPLAAKNGTDANTCCISLLSLFGVGLAQHLKETSQFQLPNLATSVSCILDFQSKLSTLSLPNNLADSCFDPLQFVISPNICAGIQTISDWTKKLGQSTPLNTACKPDLTDLSRCDVCLGAGLQVKQELISIDGNASHSIDCFYFSILYAAGIVNEFGPESNGAVTCIFSMSVYSQGGSGAKNHQALVFGLTGAGVALLVMSSLLGLYVWYDRKHRRKKLETFQFDFDPEEQGSRRRLRPNTGSIWFKIGELEKATDSFSSKNFIGRGGFGLVFKGTLADGTVVAVKRILESDFQGDIEFCNEVEIISNLKHRNLVPLRGCCVAEENENYDERGSQRYLVYDYMPNGNLEDHLFVSSDSQKAKGSLTWPQRKSIILDVAKGLAYLHYGVKPAIFHRDIKATNILLDVDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSLGSPRAFLITDWAWSLVKAGKLEEALDGSLVKDENFPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDVEVPQIPDRPMPLGHPTFYNDGSTFSISPALSGPKLQTGDMLR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00082 646 Gene3D Transferase(Phosphotransferase) domain 1 394 608 - -
Phco11g00082 646 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 394 608 - -
Phco11g00082 646 FunFam probable receptor-like protein kinase At1g11050 270 393 - -
Phco11g00082 646 Gene3D Phosphorylase Kinase; domain 1 279 393 - -
Phco11g00082 646 Pfam SPARK 26 193 IPR043891 -
Phco11g00082 646 SUPERFAMILY Protein kinase-like (PK-like) 290 601 IPR011009 -
Phco11g00082 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Phco11g00082 646 Pfam Protein kinase domain 311 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00082 646 PANTHER OS01G0750732 PROTEIN 57 608 - -
Phco11g00082 646 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Phco11g00082 646 CDD STKc_IRAK 315 602 - -
Phco11g00082 646 ProSiteProfiles Protein kinase domain profile. 309 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00082 646 SMART serkin_6 309 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00082 Phco-Chr11 516124 518064 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Phco11g00082 Pkinase 9.8e-43 CL0016