Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00061 ATGGCTGTACATACAAAATTCCGTCTTATTACTTACTCACAAGAGATTGTAGATGGACAACCTATTTTTGTCTCTTCAAACTGTCTTCCTACGAAGGCTTTGAAATATGAACCTGCAGGTCATTCTTTCCATTCTGCTGCACTTAAACTTCGTGGTGTTCAGGAAGATAAGAATGAGGCTGATGACAAAAAGGTGGTTGATGATAAGGAACAAACGTACCTTCCATCTGATTCTTATAGCAGCAAGAGCAAAAAGAAATCTGGTACTGGGGACAAGCAACAAGATCACTATGCATTATTGGGTCTGGGTCATCTAAGGTATCTGGCTACTGAGGATCAAATCCGTAAAAGCTATCGTGAGACTGCCTTGAGGTTTCATCCTGACAAGCAGGCTGCCCTTCTTTTGGCTGAGGAAACTGAAGCTGCTAAACAAGCAAAGAAGGATGAAATAGAAAGTCACTTCAAGGCAATCCAGGAAGCATATGAAGTGCTGACTGATTCTGTGAAGAGAAGGATTTATGATTCCACAGATGAGTTTGATGACGAGATTCCTACTGATTGTGCTCCACAAGATTTCTTTAAGGTGTTTGGTCCTGCTTTTATGAGAAATGGACGATGGTCAGTTAATCAACCAATTCCTACACTAGGTGATGATAATACTCCATTAAAAGAAGTTGATAATTTCTACAATTTTTGGTACTCCTTTAAAAGTTGGAGGGAGTTTCCACATGCTGATGAGTTTGATCTCGAGCAAGCTGAATCTCGAGACCACAAGAGGTGGATGGAGAGGCAGAATGCAAAATTGACAGAAAAAGCTAGGAAGGAAGACTATGCACGGATTCGTACTCTTGTTGATAATGCTTATAAGAGGGACCCCAGAATATCGAGAAGAAAGGAAGAAGAAAAAGCTGAGAAACAAAGGAAAAAGGAGGCTAAGTTCCTGGCAAAGAAATTGCAGGAAGAAGAAGCAGCCAGAATTGCAGAGGAGGAGAAGCAGAGAAAAGAGGAGGAAGAGAGACAAGCTGCAGAAGCTGCTTTACAACAGAAGAAGGTCAAAGAGAAAGAGAAAAAGCTGTTGCGAAAGGAGCGAGCCCGCCTCCGGACTCTTTCAGGACCTATTCTGTCCCAACGTTTACTAGATATTTCTGATGATGATGTAGAAAGGCTTTGCATGTCACTTGATATTGAGCGGATGAGGAGTCTATGTGAGAACATGGAAGGCAGGCAGGTTTTATTAGAGCAAGCAAGTGTTTTGAGAGATGCTCTGAGCTCTAAGAAAGATGAGAAAACCATCAAGGCTGATGAGAAAACCAATCAACAAAATGCCAATGGTTCCATCAAGGCTAATGGCAGTGCTTCGCGAAGCAATGTCGAGAAGAAGGAGGAGAAACCTTGGAGTAAAGAAGAGATTGATCTACTGAGGAAAGGAATGCAGAAATACCCCAAAGGAACTTCACGGAGATGGGAGGTTATTTCAGAATACATTGGTACTGGAAGATCTGTTGAAGAAATAATGAAGGCAACTAAAACTGTACTCCTCCAGAAACCTGATTCATCAAAAGCTTTTGACACTTTTCTTGAGAAAAGAAAACCTAGTGCACAATCAATTGAGTCTCCGCTGACAACCCGAGAAGAATTAGAAGGGGTATCGACTCCTGCCTCAGCCAATAACACAGAAGATTCTCATAGCAAAAATACAGATAATCAGAACTCTGCATCTGCTAATGGAGTTTCTTCCAGTTCAGAACAGGATGTGTGGTCTGCAGTGCAGGAACGAGCACTGGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAACAAGCCAGAGGTGGGAGAGAGTTGCAGCAGCTGTCCCTGGGAAGACTGTGAATCAGTGTAAGAAAAAATTTGCAATGATGAAGGAGAATTTCAGGAACAAGAAAAGTGCAGTCTAA 1929 0.4194 MAVHTKFRLITYSQEIVDGQPIFVSSNCLPTKALKYEPAGHSFHSAALKLRGVQEDKNEADDKKVVDDKEQTYLPSDSYSSKSKKKSGTGDKQQDHYALLGLGHLRYLATEDQIRKSYRETALRFHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLTDSVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPTLGDDNTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEDYARIRTLVDNAYKRDPRISRRKEEEKAEKQRKKEAKFLAKKLQEEEAARIAEEEKQRKEEEERQAAEAALQQKKVKEKEKKLLRKERARLRTLSGPILSQRLLDISDDDVERLCMSLDIERMRSLCENMEGRQVLLEQASVLRDALSSKKDEKTIKADEKTNQQNANGSIKANGSASRSNVEKKEEKPWSKEEIDLLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDTFLEKRKPSAQSIESPLTTREELEGVSTPASANNTEDSHSKNTDNQNSASANGVSSSSEQDVWSAVQERALVQALKAFPKETSQRWERVAAAVPGKTVNQCKKKFAMMKENFRNKKSAV 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00061 642 SMART sant 461 514 IPR001005 -
Phco11g00061 642 SMART sant 582 634 IPR001005 -
Phco11g00061 642 ProSiteProfiles SANT domain profile. 581 636 IPR017884 -
Phco11g00061 642 MobiDBLite consensus disorder prediction 436 453 - -
Phco11g00061 642 Gene3D - 457 515 - -
Phco11g00061 642 Coils Coil 301 369 - -
Phco11g00061 642 ProSiteProfiles dnaJ domain profile. 95 177 IPR001623 -
Phco11g00061 642 SUPERFAMILY Homeodomain-like 584 639 IPR009057 -
Phco11g00061 642 ProSitePatterns Nt-dnaJ domain signature. 154 173 IPR018253 -
Phco11g00061 642 CDD SANT 464 506 IPR001005 -
Phco11g00061 642 Gene3D - 576 642 - -
Phco11g00061 642 MobiDBLite consensus disorder prediction 54 92 - -
Phco11g00061 642 MobiDBLite consensus disorder prediction 534 583 - -
Phco11g00061 642 CDD DnaJ 95 166 IPR001623 -
Phco11g00061 642 Gene3D DnaJ domain 78 187 IPR036869 -
Phco11g00061 642 PRINTS DnaJ domain signature 48 66 IPR001623 -
Phco11g00061 642 PRINTS DnaJ domain signature 118 133 IPR001623 -
Phco11g00061 642 PRINTS DnaJ domain signature 149 169 IPR001623 -
Phco11g00061 642 MobiDBLite consensus disorder prediction 329 352 - -
Phco11g00061 642 SMART dnaj_3 94 169 IPR001623 -
Phco11g00061 642 FunFam Myb family transcription factor 580 640 - -
Phco11g00061 642 MobiDBLite consensus disorder prediction 54 71 - -
Phco11g00061 642 Pfam Myb-like DNA-binding domain 585 630 IPR001005 -
Phco11g00061 642 Pfam Myb-like DNA-binding domain 463 504 IPR001005 -
Phco11g00061 642 ProSiteProfiles Myb-like domain profile. 578 632 IPR001005 -
Phco11g00061 642 CDD SANT 586 632 IPR001005 -
Phco11g00061 642 ProSiteProfiles Myb-like domain profile. 457 512 IPR001005 -
Phco11g00061 642 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 641 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Phco11g00061 642 MobiDBLite consensus disorder prediction 423 466 - -
Phco11g00061 642 Pfam DnaJ domain 95 174 IPR001623 -
Phco11g00061 642 SUPERFAMILY Chaperone J-domain 93 201 IPR036869 -
Phco11g00061 642 MobiDBLite consensus disorder prediction 525 583 - -
Phco11g00061 642 SUPERFAMILY Homeodomain-like 463 507 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00061 Phco-Chr11 396296 398224 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco11g00061 DnaJ 4.6e-17 CL0392