Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00059 ATGTCAAGTATCAACACCACCGCTTACACCACCCAACTCCAAGCCTCTCATCAGGAAGAAGAGGTTGCGTACGAGGAGTGTTGCCGCAACCATGCAGTGGCCGTAGGAGGAGCTTCCTATGATGGGTGCAACGAGTATCTGAAAGCAAGCGGCAACCAAAACTCCCAGGACTCTTTCCTCTGTGCATGTTGCGGTTGTCACCGCAACTTTCACCGCAAACGCAGTACTTCGAATCCAGACCACCAAACTGAAGCAGTGGATGATCATGCCCTAGATATAGTTCCTGTTTCAGAAACGTTTCACCCAGAGCCCACCAACAACCCAGAGCCACTGCAACTTGTGAGGCCACTCAGGAGGAGGAGGACCATCTTCTCGCGCGACCAGAAGAACCAGATGACAAGGTTTGCTGAAATTTTGGGGTGGAAACCTCACAAGGGTAACAGAGAGGAGATTCAACGTTTCTGCACTGACATGGGAATAAGCCGCAAGATCTTCGTGGTGTGGCTCAACAACAATCGTCACCGTGCAACTCGAAATGTGGGCGAGAGAAGTGATCCCTCAACCAGTTAG 570 0.5123 MSSINTTAYTTQLQASHQEEEVAYEECCRNHAVAVGGASYDGCNEYLKASGNQNSQDSFLCACCGCHRNFHRKRSTSNPDHQTEAVDDHALDIVPVSETFHPEPTNNPEPLQLVRPLRRRRTIFSRDQKNQMTRFAEILGWKPHKGNREEIQRFCTDMGISRKIFVVWLNNNRHRATRNVGERSDPSTS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00059 189 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 74 IPR006456 -
Phco11g00059 189 Pfam ZF-HD protein dimerisation region 22 75 IPR006456 -
Phco11g00059 189 Gene3D - 113 178 - -
Phco11g00059 189 ProSiteProfiles 'Homeobox' domain profile. 115 179 IPR001356 GO:0003677
Phco11g00059 189 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 175 - -
Phco11g00059 189 NCBIfam homeobox domain, ZF-HD class 118 173 IPR006455 -
Phco11g00059 189 SUPERFAMILY Homeodomain-like 112 178 IPR009057 -
Phco11g00059 189 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 24 74 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00059 Phco-Chr11 382015 382584 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phco11g00059 ZF-HD_dimer 2.1e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00059 11 382015 382584 Phco11g00059 11 382015 382584 ECH