Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00056 ATGGAACTATCAGATTTGCAAAACAACAAGCAGACCACCACCAACACCAACACAAACAACAACAACAACACCAACACAAAAACAAACACAGCAGGAGGAGGAGGAGGAGGAGTTGGTGGTGGTGGTGGTGCTACTGCTGCTACTCATCCTCGTCACCATCACCACCAACAATCCTCTTCTTCCCATCTTCCGCTACCTTTCGATGCCAGGCCAAACCCTTCATCCCCCTTCATCACTTCCTCCACCTCTTCTTCCAATTCTTCCTCCTCTTCCTCCTCCGCCTCCGCCTCTTCCCACATCATCGACGCCTCCCTAGCCATCGCCACCAGATCTGATGATTCCGCCAACAAGACCCAACAACTCTCCACCACCGTCGCCGCCGCCACCAACCCTCCCAAGCGATCCACCAAGGACAGGCATACCAAAGTCGACGGCCGCGGCCGCAGAATTCGAATGCCTGCCACCTGCGCCGCCAGGGTTTTCCAATTGACCAGAGAATTGGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCATCATCGCCGCCACCGGAACCGGCACTATCCCCGCTAATTTCTCCACCCTCAACGTCTCGTTCCGCAGCAGCGGCTCCACGCTGTCGGCACCGCCGTCGAAGTCAGCCCCGCACACCTTTCACGGCGCGCTCGCACTCGCTCACCACCCTTACGAGGAAGCGTTTCAACACACCGCTTTACTTGGCTTCCACGCTCACGCTCACCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCAGCACCAACTTCTTTCCGCAGATCAAATCGCTGAAGCGCTTCCCAGCGGTGGCGGTGACTCCGGCGACAGCTATCTCAGGAAACGGTACCGAGAAGATCTGTTCAAAGACGATAACATTAACACCCAATCACAGAACGAGAGCGGCGACGGTTCTTCGCCTAAAACTCCGAACCTACAGCTACCGAAGCAGCAGGCCCAGCAGCAAACCGAAGCTGGTCCTGGGCTTCTCAGGCCCACGAATTTGCTACCCGCGACAGCGATGTGGGCCGTGGCACCCGCTCCCGCAAGTGGGCCTCCAGGCAGCACAATTTGGATGCTTCCGGTAACCGCGGCTTCTTCTGCTTCTGCAGCAGCTGTAGCTGCCGCTTCAGCTTCTGCTTCTTCTGGTGGTGGTGGATCCTCTGCGAGTTCGGAGACTCAGATGTGGCCTTTTCCTCAGAGTGGTTTCATGCCAAGGTTCAATCTTCCGAGTGCGCTTGAATTCCAAGGCGCACGTGGGGGTTCTCTGCAATTGGGGTCAATGTTAATGCCGCAGCAACCTTCTCAACATCTGGGTCTCGCCATGTCCGACTCCAACTTCGGCATGTTGGCTGCCCTTAATGCTTACACCAGACCTGGTTTCAATATTAATTCTGACAATCATCATCCCCATCACCATCATCATCCCTTGGACCATCAACATCAACATCAACATCAACCTCAACCTAGTGAGAGTGGAGAAGATGATCCTAATAGCTCCCAGTGA 1542 0.561 MELSDLQNNKQTTTNTNTNNNNNTNTKTNTAGGGGGGVGGGGGATAATHPRHHHHQQSSSSHLPLPFDARPNPSSPFITSSTSSSNSSSSSSSASASSHIIDASLAIATRSDDSANKTQQLSTTVAAATNPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSFRSSGSTLSAPPSKSAPHTFHGALALAHHPYEEAFQHTALLGFHAHAHQQHQQHQQHQQQHQLLSADQIAEALPSGGGDSGDSYLRKRYREDLFKDDNINTQSQNESGDGSSPKTPNLQLPKQQAQQQTEAGPGLLRPTNLLPATAMWAVAPAPASGPPGSTIWMLPVTAASSASAAAVAAASASASSGGGGSSASSETQMWPFPQSGFMPRFNLPSALEFQGARGGSLQLGSMLMPQQPSQHLGLAMSDSNFGMLAALNAYTRPGFNINSDNHHPHHHHHPLDHQHQHQHQPQPSESGEDDPNSSQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00056 513 MobiDBLite consensus disorder prediction 73 94 - -
Phco11g00056 513 Pfam TCP family transcription factor 135 270 IPR017887 -
Phco11g00056 513 MobiDBLite consensus disorder prediction 111 131 - -
Phco11g00056 513 MobiDBLite consensus disorder prediction 1 32 - -
Phco11g00056 513 MobiDBLite consensus disorder prediction 111 146 - -
Phco11g00056 513 MobiDBLite consensus disorder prediction 301 344 - -
Phco11g00056 513 MobiDBLite consensus disorder prediction 473 513 - -
Phco11g00056 513 ProSiteProfiles TCP domain profile. 136 190 IPR017887 -
Phco11g00056 513 MobiDBLite consensus disorder prediction 304 340 - -
Phco11g00056 513 MobiDBLite consensus disorder prediction 1 94 - -
Phco11g00056 513 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 51 462 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00056 Phco-Chr11 364883 366424 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Phco11g00056 TCP 1.5e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00056 11 364883 366424 Phco11g00056 11 364883 366424 ECH