Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00024 ATGGGTTGTATATGCTCCAAAGCACATTCATCAGACCAATTCGTTCCTGAAAACCATACCCAAGATTTTAAGGCCACTCCATCCTCCACCACCAACCATTTCGGAGAAACGACTTCCCTCATATCCAATGCAAATCAACATTCAAATTCAAATTCAAATGCAACCGAAGAAAAAGCCTCCACCCCAATTTTCTCGGATCAACTTCAACGTAAAGGGGACCAGAATGCCAATGGGAATGGAATGCGATCAACGAAACATACACAACAACCTAAGATGTGTAGGTTGTATAGTTTAACCAAGGGGGAAAGAGGAGTACAGGTTCTTGCTGGGTGGCCCTCTTGGCTCTCTGCAGTTGCTGGTGAAGCCATTAGTGGCTGGATACCTCGTAGGGCTGATTCCTTTGAGAAGTTGGATAAGATTGGCCAAGGAACTTACAGCAGTGTTTATAAAGCTCGTGATCTCGAAACCAATAAAATTGCTGCATTGAAGAAGGTTCGATTTACTAATATGGATCCAGAAAGTGTTCGTTTTATGTCAAGGGAAATTATTGTGCTGCGAAGGCTTGATCATCCCAATGTCATGAAGCTTGAGGGCATGATTGCCTCACGGGTCTCTGGTAGCTTGTACCTTATCTTTGAATATATGGACCATGATCTTGCAGGACTTGCAGCAATACCTGACAACAAGTTTACCGAAGCACAGATCAAGTGTTACATGCAACAGCTTCTTCGTGGTCTTGAGCATTGTCACAGTCGTGGTGTTGTGCATCGTGACATAAAAGGCTCAAATCTTCTGGTTGACAGTAATGGCAAACTAAAGATTGGTGATTTTGGGCTAGCAACTTTGCTTCAGCCATCTCAGGGGCAGCCTTTAACAAGTCGGGTAGTAACCTTGTGGTACAGGCCACCTGAACTTCTTCTTGGAGCTACGGATTATGGAATTACTGTGGATTTGTGGAGTGCTGGATGTATTCTTGCAGAGTTGTTTGTTGGAAAGCCTATACTGTCTGGACGAACAGAGGTGGAGCAACTGCATAAAATCTTCAAACTTTGTGGATCTCCCTCTGAAGAATACTGGAAGAAGTCAAAGCTACCACATGCAACAATTTTTAAACCTCAACAACCTTACAAACGCGTTGTTTCTCAAACATTCAAGGATTTTCCTTCATCTACCCTGAGCCTCATGGAGGTCCTTCTAGCTGTTGAATCGAATGATAGAGGAACTGCATCTTCAGCACTTCGGCATGAGTTCTTCACAACAATGCCACTTCCTTGTGATCCATCATCTTTGCCAAAGTACCCACCGAGTAAGGAGTTTGATGCGAAACTTCGCGAAGAGGAAGCTAGAAGACGAAGAGCACCAAATAAAGGACATGAACATGAATCAGTTGGGAGTAATTTTAGAGAGTCTAAAGCTGTGGCAATACCTGATGCGAATGCTGAGTTTCAGGCAACCATGGGGAGACAAGGACACTGTATTTCTAAGCGCGTCACTGAGAAGTACAATTACGAAAAGGACGACGGTTATGGCTTCTCTCGTGAACCTGTAAAGTCAAGAACACTCAATGTATTTTCTCATTCTGGCCAGTCAATGCATCCAAGTGTTTATGGGTCCTCAACCAATATGAATTTGAAAGAGGAAAATGTTCGCACCTTCCATGATCATGGCTTTATATCAGGAAAGTCTGAGTTGAGAAAACATACTTCCTATTGGCAAGGTAGCCCTGCAAAATTGTCAAGATTTTCTAATTCAATTGCGGTTCGAGGTGATTCACTGCTTGATATGAGTGGTGACTTTAGTGTGAATTCGCAGTTGCCAGAAGATCAATTTGGCATGAGATATAGCCATGAAGCTGATGGTGAGTCCAACCAATTGTTGGATGGACTCAAATCTTCACACAAGGACTTTCTTCCCATGGGGAAGGATCGTGCCAAGGGCTTTGCTAACAAAAATGCCCGCATGCATCATTCTGGACCGTTGCTGGCTCGAGGGGATAATCTTGAAGAAATGCTGAAGGCACACGAAAGGCAAATCCAAAATGCTGTCCGGAAAGCTCGTTTGGGTGTGATGTCTATATCAAATATGGATCCATCCAGTGGTAGTGCATGGTGTTCCCTTGGCGTCCAAGCATCAAACGTCAATTATTCCTCCCAGGCCCTATCCAGCTAA 2169 0.4385 MGCICSKAHSSDQFVPENHTQDFKATPSSTTNHFGETTSLISNANQHSNSNSNATEEKASTPIFSDQLQRKGDQNANGNGMRSTKHTQQPKMCRLYSLTKGERGVQVLAGWPSWLSAVAGEAISGWIPRRADSFEKLDKIGQGTYSSVYKARDLETNKIAALKKVRFTNMDPESVRFMSREIIVLRRLDHPNVMKLEGMIASRVSGSLYLIFEYMDHDLAGLAAIPDNKFTEAQIKCYMQQLLRGLEHCHSRGVVHRDIKGSNLLVDSNGKLKIGDFGLATLLQPSQGQPLTSRVVTLWYRPPELLLGATDYGITVDLWSAGCILAELFVGKPILSGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVSQTFKDFPSSTLSLMEVLLAVESNDRGTASSALRHEFFTTMPLPCDPSSLPKYPPSKEFDAKLREEEARRRRAPNKGHEHESVGSNFRESKAVAIPDANAEFQATMGRQGHCISKRVTEKYNYEKDDGYGFSREPVKSRTLNVFSHSGQSMHPSVYGSSTNMNLKEENVRTFHDHGFISGKSELRKHTSYWQGSPAKLSRFSNSIAVRGDSLLDMSGDFSVNSQLPEDQFGMRYSHEADGESNQLLDGLKSSHKDFLPMGKDRAKGFANKNARMHHSGPLLARGDNLEEMLKAHERQIQNAVRKARLGVMSISNMDPSSGSAWCSLGVQASNVNYSSQALSS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00024 722 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Phco11g00024 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Phco11g00024 722 FunFam probable serine/threonine-protein kinase At1g54610 217 458 - -
Phco11g00024 722 PANTHER CELL DIVISION PROTEIN KINASE 132 424 - -
Phco11g00024 722 Gene3D Transferase(Phosphotransferase) domain 1 217 457 - -
Phco11g00024 722 CDD STKc_CDK9_like 134 418 - -
Phco11g00024 722 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Phco11g00024 722 Pfam Protein kinase domain 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00024 722 MobiDBLite consensus disorder prediction 16 89 - -
Phco11g00024 722 Coils Coil 664 684 - -
Phco11g00024 722 MobiDBLite consensus disorder prediction 442 465 - -
Phco11g00024 722 FunFam probable serine/threonine-protein kinase At1g54610 121 216 - -
Phco11g00024 722 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00024 722 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00024 722 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00024 Phco-Chr11 189162 194911 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Phco11g00024 Pkinase 6.6e-69 CL0016