Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00020 ATGTGTGCCATCCGCCAATGGGTTTGGCCTGAACCCAGTAAATGGGTGAAGGGAAAACTGGTTGGATGTGGATCTTTCGGCACTGTCCATTTGGCGATGAACAAATCCACGGGTGCCCTTTTTGTAGTAAAATCATCACATTCCAGGGCTGGACGTGAGGCTTTGGATGAAGAGGTCAAAATTCTCAAAACATTTAATTCCTCACCATACATTGTCCAATATTTAGGGTCAGAGGAGGAGCAGGGCAAACTGAATGTTTTTATGGAGTATATGGCAGGAGGTAGTTTGGCAGACGTGGCGCTCAAGTTCGGTGGCTCATTGGATGAAGAGGTGGTTCGGGTGTATACCAGGGAAATTCTTCACGGCCTAAACTATCTTCACCTTCATGGAATTGCACACTGCGATCTCAAGTGCAAGAACGTGCTTTTGGGCCCACCTGGCAACGTCAAGCTGGCTGATTTTGGATGTGCCAGAAGGGTCAAGGACTTGGTCAAGTCCAGTGGTGGGACCCCTCTTTGGATGGCTCCTGAAGTGCTGAGGAACGAGTCTGTGGATTTGTCTGCCGATGTATGGTCCTTGGGTTGCACAGTTATTGAGATGGCTACTGGCACGCCTCCTTGGGCTCACGATGTTTCAGATCACATTAGTGCTGTGCTCAGGATTGCTCATGGTGATGGTATACCTCAGTTTCCACCCCATTTCTCCAAGGAGGGTTTGGATTTCTTGAGCATGTGCTTGCAGAGAGACCCCAGTAAGAGGCCTACGGCTGAGCAGTTACTTACCCATCCCTTTGTTACCTCAACACCTTCTCAACAACAGCCTGCTTCCTCGCCCGCAAGCGTCTTGGAGGTTCACGATTTCAAAGACTCTTGTGACATAGACGAATTAGAAAGTTCAGTGGGGGATGATTTCTCAGTCACAAACACATTTGCATCTCACAGTGATTACTCCAACGGAACACCAGTATGTAAAGCGGAAGACAGTGCTTTGGGCTCATCAGGGAATTGGATTACAGTTAGGTCAGGCTGA 1029 0.4859 MCAIRQWVWPEPSKWVKGKLVGCGSFGTVHLAMNKSTGALFVVKSSHSRAGREALDEEVKILKTFNSSPYIVQYLGSEEEQGKLNVFMEYMAGGSLADVALKFGGSLDEEVVRVYTREILHGLNYLHLHGIAHCDLKCKNVLLGPPGNVKLADFGCARRVKDLVKSSGGTPLWMAPEVLRNESVDLSADVWSLGCTVIEMATGTPPWAHDVSDHISAVLRIAHGDGIPQFPPHFSKEGLDFLSMCLQRDPSKRPTAEQLLTHPFVTSTPSQQQPASSPASVLEVHDFKDSCDIDELESSVGDDFSVTNTFASHSDYSNGTPVCKAEDSALGSSGNWITVRSG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00020 342 SMART serkin_6 15 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00020 342 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Phco11g00020 342 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 15 315 - -
Phco11g00020 342 SUPERFAMILY Protein kinase-like (PK-like) 9 302 IPR011009 -
Phco11g00020 342 ProSiteProfiles Protein kinase domain profile. 15 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00020 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Phco11g00020 342 Pfam Protein kinase domain 17 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g00020 342 Gene3D Transferase(Phosphotransferase) domain 1 12 320 - -
Phco11g00020 342 CDD STKc_MAPKKK 14 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00020 Phco-Chr11 178330 179358 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Phco11g00020 Pkinase 3.2e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00020 11 178330 179358 Phco11g00020 11 178330 179358 ECH