Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00018 ATGCAACAACATATCTCAACGATCCAACGACTCAATTCGCGATTCAACCGCTCCGCTCTTCTCAATCGCTCCTTCCGTTCACTGTTGGTTATCTTAGTATTGTCACTGGAAAAATATATCATGTCTGAAGATGCTGGATCTATGTTGGTAGTTTATGACGATCCCTCCGACCAACGGTCTCTATCTTTGGATGATGCAAGCAGCACTGAGGAGTCACCTGATGAAACCAGGCTCTCCTTGGAATCAACACATGATGCTATTCCTTACATTGGTCAAAGGTTTGCCACTCATGATGCTGCTTATGAGTTCTATAGTGAATTTGCCAAAAGGAGTGGCTTCTCAATTAGACGTCACCGTACCGAAGGAAAAGATGGTGTTGGCAAAGGACTTACTCGGCGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGTCAAAACATCAACTGAAAGTAAACCTCAAAGAAATAGAAAGTCTTCTCGCTGTGGGTGTCAGGCGTACTTGCGGATTAGCAAAACAGCAGAATTTGGAGCTCCAGAATGGCGTGTGACTGGTTTTGCTAACCACCATAATCATGAACTTCTGGAACCAAACCAAGTTCGATTTCTCCCTGCATACAGAACTATCTCGGATGCTGACAAAAATCGAATACTAATGTTTGCCAAAACAGGAATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACCGAAAAAGACGTGAGGAATTTACTCCAGTCATTTAGGAAATTAGATCCAGAAGAAGAAAGCTTAGATTTATTAAGAATGTGTAGAAATATTAAGGAGAAAGACCCTAATTTTAAATTCGAGTACACACTTGATGCAAACAACCGTTTGGAGAATATTGCCTGGTCATATGCTTCATCAATCCAATGGTTTGAAATATTTGGTGACGCTGTGGTGTTTGATACAACACACCGCCTAACTGCTTTTGACATGCCGCTAGGGATATGGGTTGGAATAAATAATTATGGAATGCCTTGCTTTTTTGGCTGCACACTTTTACGGGATGAAACCGTGAGGTCGTTTTCCTGGGCACTGAAGGCTTTCTTAGGGTTCATGAATGGGAAGGCTCCACAGACTATATTAACCGACCAAAATATATGTCTCAAAGAAGCACTATCCACAGAAATGCCTACAACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCATCCTGGTTTAATGCTGTTCTAGGGGAACGGTACAATGAGTGGAAGGCTGAATTTTATAGACTCTATAATCTTGAGTCAGTTGAGGATTTTGAACTAGGTTGGAGGGAAATGGTTTGTTCTTTTGGGCTGCATTCCAATCGGCACATGGTTAATTTATATAGTTCACGCTCTCTTTGGGCGTTGCCATTTTTGAGAAGCCATTTTCTTGCTGGAATGACTTCAACTGGTCAGTCAAAGTCAATCAATGCTTTCATTCAAAGATTTCTAAGTGCACAAACTCGCCTTGCACACTTTGTTGAACAGGTAGCCGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTTGCCTCAAAACAGGGGCCCCTATGGAATCACACGCTGCCACAATCCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAAGAACTTGTGCTGGCTGCACATTATGCATCGTTTTCAATTGAAGATGGTTTTCTTGTGAGGCACCACACCAAAGCTGAGGGAGGTCGGAAAGTTTTTTGGGCCCCTCAAGAAGGAATTATAAGTTGTAGCTGCCATCAGTTTGAGTTCACAGGTATTCTTTGCCGGCATTCCCTTAGAGTTCTTTCAACAGGAAATTGCTTTCAGATCCCAGATAGATATCTTCCTATTCGATGGCGTCGTATAAGCATGCCCTCTTCTAAGCTTCTTCAAAGTCCACCAAACGAGCATGCTGAAAGAGTCAAGTTATTACAAAACATGGTTTCATCTCTGATGACAGAATCTGCTAAATCTAAGGAACGGTTGGATATTGCAACAGAACAAGTTTCCATTCTTCTGTCTCGCATAAGAGAGCAACCAATTTCTTTACAAGGTGGCCGAGATATTTCTTCCATTAATAGGAATCTTTGA 2160 0.4176 MQQHISTIQRLNSRFNRSALLNRSFRSLLVILVLSLEKYIMSEDAGSMLVVYDDPSDQRSLSLDDASSTEESPDETRLSLESTHDAIPYIGQRFATHDAAYEFYSEFAKRSGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYLRISKTAEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKEKDPNFKFEYTLDANNRLENIAWSYASSIQWFEIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCTLLRDETVRSFSWALKAFLGFMNGKAPQTILTDQNICLKEALSTEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTSTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATILTPFAFSKLQEELVLAAHYASFSIEDGFLVRHHTKAEGGRKVFWAPQEGIISCSCHQFEFTGILCRHSLRVLSTGNCFQIPDRYLPIRWRRISMPSSKLLQSPPNEHAERVKLLQNMVSSLMTESAKSKERLDIATEQVSILLSRIREQPISLQGGRDISSINRNL 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00018 719 SMART 26again6 604 631 IPR006564 GO:0008270
Phco11g00018 719 ProSiteProfiles Zinc finger SWIM-type profile. 593 629 IPR007527 GO:0008270
Phco11g00018 719 MobiDBLite consensus disorder prediction 60 82 - -
Phco11g00018 719 Pfam MULE transposase domain 318 410 IPR018289 -
Phco11g00018 719 Pfam FAR1 DNA-binding domain 102 195 IPR004330 -
Phco11g00018 719 Pfam SWIM zinc finger 600 627 IPR007527 GO:0008270
Phco11g00018 719 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 83 693 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00018 Phco-Chr11 174342 177362 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco11g00018 MULE 2.5e-18 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00018 11 174342 177362 Phco11g00018 11 174342 177362 ECH