Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00011 ATGGCTTCCGCTGCGCCAGGTGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCTCTTGTCACTCTTCCGCGTGAAGGGGAGAGAGTTTATTACTTCCCCCAAGGTCATATGGAACAGCTCGAGGCATCAATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCACATCAAAGTGAGGTGACAAGCCCTGATGATCCTCTACCAGAACCTCCAAGATGTACAGTTCATTCATTTTGCAAGACACTCACAGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTGCCACCACTGGATATGACGCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGCAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGTTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCTTCTGTTATATCTAGTCATAGTATGCATCTGGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACAGGAACCTTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATTGTGGGTGTTGGAGATAATAAATCGTCAGTCTGGACTAATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCTTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAGTTGGAGCCACTTGTGTCTACCCCTCCCACAAACTCCCAGCCATCCCAAAGAAACAAGAGATCACGGCCTCATGTTCTTCCTTCAACTATGCCTGATTCTTCTATGCAAGGAGTACGGAAATCACCAGTTGATTCTGCACCATTCTCTTATCTTGACCATCAACACGGGCGAGACATCTATCCACTGGCCAAATTCAATTCTACTGCAACTGGCTTCCTTGGTTTTGGTGGGAATTGTTCTGCTTCCAACAAATCAATATTTTGGTCTAGTAGGACGGAAAACTCTACAGAATCTTTTTCACCTGTAGCACTTAAAGAATCTGGAGAGAAGAGACAAGGGACTGCAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGATAATTGCAATGGGGAAGAAAGTCTACCAATGGTCACTTTTTCAGGAAGGGTGGGTGATGATGGCCCCCTTTCATCTTTGGATGCTGAGTCTGACCAGCATTCTGAACCATCAAATATGAATCGATCTGATATTCCTTCGGTAAGTTGTGATGCTGAAAAATCATGCTTGCGGTCCCCCCAGGAGTCTCAAAGTAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCAGTTGGAAGGGCTGTGGATTTAACTCGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAAATGTTTGACATCAAGGATGAACTCTGTGGATCCACAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGACGACATGATGATGGTTGGGGATGATCCATGGCTTGAGTTTTGTAGCATTGTGAGGAAAATTTTCATCTATACTGCTGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGACTTCCAATCAATGAGGAAGTTAAACCCAGCAAAATGGACTCTGAAGCAGTAGTCAATCCTGATGACCAGTCATCTATTGTGGGGTCCGGTTGTTAA 1995 0.4401 MASAAPGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEAHQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWTNSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPTNSQPSQRNKRSRPHVLPSTMPDSSMQGVRKSPVDSAPFSYLDHQHGRDIYPLAKFNSTATGFLGFGGNCSASNKSIFWSSRTENSTESFSPVALKESGEKRQGTANGCRLFGIQLLDNCNGEESLPMVTFSGRVGDDGPLSSLDAESDQHSEPSNMNRSDIPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKDELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPINEEVKPSKMDSEAVVNPDDQSSIVGSGC 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00011 664 SUPERFAMILY CAD & PB1 domains 542 617 - -
Phco11g00011 664 Gene3D - 535 629 - -
Phco11g00011 664 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Phco11g00011 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 629 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco11g00011 664 MobiDBLite consensus disorder prediction 499 517 - -
Phco11g00011 664 SUPERFAMILY DNA-binding pseudobarrel domain 107 247 IPR015300 -
Phco11g00011 664 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Phco11g00011 664 MobiDBLite consensus disorder prediction 643 664 - -
Phco11g00011 664 Gene3D - 281 353 - -
Phco11g00011 664 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco11g00011 664 FunFam Auxin response factor 116 220 - -
Phco11g00011 664 MobiDBLite consensus disorder prediction 491 517 - -
Phco11g00011 664 ProSiteProfiles PB1 domain profile. 540 633 IPR000270 GO:0005515
Phco11g00011 664 MobiDBLite consensus disorder prediction 349 385 - -
Phco11g00011 664 Gene3D - 115 220 IPR015300 -
Phco11g00011 664 SMART B3_2 118 220 IPR003340 GO:0003677
Phco11g00011 664 FunFam Auxin response factor 281 353 - -
Phco11g00011 664 FunFam Auxin response factor 535 629 - -
Phco11g00011 664 MobiDBLite consensus disorder prediction 650 664 - -
Phco11g00011 664 MobiDBLite consensus disorder prediction 347 391 - -
Phco11g00011 664 Pfam AUX/IAA family 584 630 IPR033389 -
Phco11g00011 664 Pfam AUX/IAA family 537 576 IPR033389 -
Phco11g00011 664 CDD B3_DNA 116 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00011 Phco-Chr11 137610 142815 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco11g00011 AUX_IAA 1.3e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00011 11 137610 142815 Phco11g00011 11 137610 142815 ECH