Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g02041 ATGGATTATTCTTCACGGATTAACACTTCCTTGGATCTCAATATTAATCCTCTCAGGCTTCATCAAGAACTTCCCAAAAAGGAGGTGGAACATAATTTTTTCTCTTTGGGCCTGAAGAAATCTTCTGTAAAAGAACAGTCTTCTGGTGCCTTGGTGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAGAGATTGAGCGAAATGCTCACGGAGATGTGTGAGAACTACAATGCTTTGCGAAACAATCTGATGGAATATATGAGGAAGAATCCTGATAAAGAGCTCAGCTCATCCAAGAAAAGGAAGTCTGAAAGCAGCAACAATAATAGTACTCCGATGGGCATCAACGGAAACTCTGAGAGCAGCTCAACCGATGAAGAATCATGCAAGAAACCAAAGGAAGACATCAAGACAACAGTTTCAAGAGTTTACGTGAGGACGGAAGCGTCTGATACAAGCCTGATTGTGAAAGATGGATATCAGTGGAGGAAATATGGACAAAAGGTGACCAGGGATAACCCTTCTCCAAGAGCTTACTTCAAGTGCTCTTTTGCTCCAAGTTGCCCGGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCCCACCCATCTCAAATGGAGGTAACAACAGGCTCCAACCGTGGTGTGGCCCCATGTTCAGGGTCTCTTGGCTCTTCCGCACCAACAGTTACCGTTGACTGGACAAAATCCAAGTCCAGCAGCGATTCCAAGAATACAACTCCCAAAATCGAAGTACCAGAAGTCCCTCAGGTTTTGGTAGAACAGATGGCCACTTCCTTGACTAAGGATCCTAACTTCAGAGCAGCACTAGTTGCCGCAATCTCAGGAAAAATGTTGCACAATAATTGA 912 0.4441 MDYSSRINTSLDLNINPLRLHQELPKKEVEHNFFSLGLKKSSVKEQSSGALVEELKRVSAENKRLSEMLTEMCENYNALRNNLMEYMRKNPDKELSSSKKRKSESSNNNSTPMGINGNSESSSTDEESCKKPKEDIKTTVSRVYVRTEASDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPSQMEVTTGSNRGVAPCSGSLGSSAPTVTVDWTKSKSSSDSKNTTPKIEVPEVPQVLVEQMATSLTKDPNFRAALVAAISGKMLHNN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g02041 303 Pfam WRKY DNA -binding domain 157 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco10g02041 303 Gene3D WRKY domain 139 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco10g02041 303 MobiDBLite consensus disorder prediction 235 264 - -
Phco10g02041 303 SMART WRKY_cls 156 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco10g02041 303 MobiDBLite consensus disorder prediction 102 123 - -
Phco10g02041 303 FunFam WRKY transcription factor 40 141 218 - -
Phco10g02041 303 ProSiteProfiles WRKY domain profile. 151 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco10g02041 303 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 28 299 IPR044810 GO:0003700
Phco10g02041 303 MobiDBLite consensus disorder prediction 91 135 - -
Phco10g02041 303 SUPERFAMILY WRKY DNA-binding domain 153 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco10g02041 303 Coils Coil 55 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g02041 Phco-Chr10 42049972 42051451 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco10g02041 WRKY 2e-23 CL0274