Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g02035 ATGTCATTGAGGCAGCTGGAGTTTCTCCTTTCCCCTGCTTTCTACTCTCCGATGGAGCAAGAATGGGAGAATTGGTCTCTTCAAATGGAAAAGGGTGATGATAGGTGTAAGGATCTGGTGTTAGAAGAGTGCCACACAGAAACAGAAGAAGAGGAGTTTCTCAGGGACATACTTGGTGAACCGGGTTTTTGTTCTGAAAGTCACCACAACTCAGCAACGCCCACTGATGGTAGCAGTTTATCCTCAGATGAGACGCTAGCAATGGCAGCCTCCAATGTCAATATACCTCCCCACAGGCCCAACATCGCTAATTCCTCTCCAAGAACATATATTTTGTCTTTCGATACCTCCACCATTATACCACCCACCCCTAAATCATCATCCACTTCCACTCTCTCCTCCAAAAAGCGCCACCGGAATCTCAACTCAGAACAACCAAAACCAAACGCCACCCCCCAAGCTGGTGGAAAGAGGGGCAGAAACGGTTCCCTTGACCACATCATGGCCGAAAGAAAAAGGAGACAGGAACTCGCGGAAAGGTTCATAGCACTTTCAGCCACTATCCCTGGCCTCAAGAAGACGGACAAGAGTTCAATACTTTGCGAAGCGATTAATTACGTGAAAGAACTTCAAGGACGTGTGACGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAAGCAGTGATTATCCTGAAGAAGAGTGATGTCTGTGGAAACGAAGATTGTAGTAACTCAAGTGAGACAGATTCCAAAGATTGGTGTAGAATGCTCCCTGATATTGAAGCAACAGTGATGGAGAATGAGGTGCTGATTGAGATCCATTGTGAGAAGGAAGAAGGAGTTGTGCTGAAATTATTGGACCAGCTTGAAAATCTTCATCTCTGTGTCACCGCCACCAGCGTATTGCCCTTTGGGAATTCAACTCTTGGCATCACCATTATCGCTCAGATGGGTGACGCATACAAGATGACAATGAACGACGTAGTGAAAAATCTGAGAGAAGTACTGATGAATCAAAGCAGCATCCATAACGATCCGTACTAG 1044 0.4598 MSLRQLEFLLSPAFYSPMEQEWENWSLQMEKGDDRCKDLVLEECHTETEEEEFLRDILGEPGFCSESHHNSATPTDGSSLSSDETLAMAASNVNIPPHRPNIANSSPRTYILSFDTSTIIPPTPKSSSTSTLSSKKRHRNLNSEQPKPNATPQAGGKRGRNGSLDHIMAERKRRQELAERFIALSATIPGLKKTDKSSILCEAINYVKELQGRVTELEERNKRGKEAVIILKKSDVCGNEDCSNSSETDSKDWCRMLPDIEATVMENEVLIEIHCEKEEGVVLKLLDQLENLHLCVTATSVLPFGNSTLGITIIAQMGDAYKMTMNDVVKNLREVLMNQSSIHNDPY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g02035 347 MobiDBLite consensus disorder prediction 116 162 - -
Phco10g02035 347 MobiDBLite consensus disorder prediction 116 136 - -
Phco10g02035 347 Gene3D - 157 226 IPR036638 GO:0046983
Phco10g02035 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 228 IPR036638 GO:0046983
Phco10g02035 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Phco10g02035 347 Pfam Helix-loop-helix DNA-binding domain 166 211 IPR011598 GO:0046983
Phco10g02035 347 Coils Coil 207 227 - -
Phco10g02035 347 SMART finulus 167 216 IPR011598 GO:0046983
Phco10g02035 347 PANTHER BHLH TRANSCRIPTION FACTOR 13 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g02035 Phco-Chr10 42018996 42021838 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco10g02035 HLH 1.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g02035 10 42018996 42021838 Phco1g00094 1 680160 681943 PCT
Phco1g00095 1 689154 692667 Phco10g02035 10 42018996 42021838 PCT