Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g02027 ATGGACCTTATGTGGTCAGAGCCACGTCCATCATCTGAAAATGATCTGAACATTCCTTTTTCAGAGAACTCTCCACCTTGCTCAAAGCATGTGCTTCCTTCCATGGATATCCAAAAGGAGAGGAAGGAGGACAAAGAACATCCCTATGAGTCTGCTCCAGCACACCTTGAACTGGATTCAGGTGATGAGTCAAAGCCAGAACTCAACCTCATCAACTGTATCGATACAAATTTGTCCATGAACTCCTCAGAATCTATTCATGGAGGAGGACACGGTAATGAATTGGAGCCTAGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGCTCGCAGGCCCTTGGGGGACACCAGAATGCACATAAACGTGAAAGAACTTTGGCAAAAAGAGGACACAAAGCTGGTGCTGCAGTTCCAATAGATTTTGCACGCAGGTATTCCAGCATGGCTTCTCTGCCTTTGCATGGCTCCTATAACAGGTCACTTGGAATTCAGGCGCATTCTATGATCAACAAACGCTCTTTTCAAACACAAACACCTTGTTTTGGTTTGTCCCATTCTCATGCTCATAACGGCTGGCAGAAGCTGCCTTTGTACTCACCACAGGCAACTGGGACAGAAACTGAATCCCCCTTGTCTGGTGGCATCCAACGGCTAGGGAAGTTTTCTCCAAGGCTGGTGCCAGAGGGATTTGGAGGCTACTGGTTGGATGGTATTAACCATTTGAAGACTGAGCAAGAGGAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAA 780 0.4628 MDLMWSEPRPSSENDLNIPFSENSPPCSKHVLPSMDIQKERKEDKEHPYESAPAHLELDSGDESKPELNLINCIDTNLSMNSSESIHGGGHGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKAGAAVPIDFARRYSSMASLPLHGSYNRSLGIQAHSMINKRSFQTQTPCFGLSHSHAHNGWQKLPLYSPQATGTETESPLSGGIQRLGKFSPRLVPEGFGGYWLDGINHLKTEQEELHKLDLSLKL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g02027 259 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Phco10g02027 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Phco10g02027 259 SUPERFAMILY beta-beta-alpha zinc fingers 97 127 IPR036236 -
Phco10g02027 259 MobiDBLite consensus disorder prediction 10 28 - -
Phco10g02027 259 FunFam Zinc finger protein 2 76 145 - -
Phco10g02027 259 Gene3D Classic Zinc Finger 78 141 - -
Phco10g02027 259 MobiDBLite consensus disorder prediction 1 50 - -
Phco10g02027 259 MobiDBLite consensus disorder prediction 34 50 - -
Phco10g02027 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 259 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g02027 Phco-Chr10 41962050 41962829 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco10g02027 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g02027 10 41962050 41962829 Phco10g02027 10 41962050 41962829 ECH