Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01877 ATGGCAATGTCCTGCAAGGATGGTAAACCAGGATTGGATAACGGGAAATATGTCCGTTACACGCCTGAGCAGGTTGAAGCCCTCGAGAGGCTTTATCATGACTGCCCAAAACCCAGTTCCATTCGCCGCCAGCAGCTCATTCGTGAGTGCCCTATTCTCTCCAACATTGAGCCTAAGCAAATCAAAGTTTGGTTTCAGAACAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCCTCGCGGTTGCAAGCTGTAAATAGGAAGCTCACAGCCATGAACAAGCTTCTCATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAGTTGGTTTACGAAAATGGCTACTTTCGCCAACACACTCAGAATACTGCGCTTCCAACCAAAGATACGAGCTGTGAATCGGCGGTGACTAGTGGTCAACGCAGTTTAACAACCCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTATGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCGAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGCGGCCTTGTCGGTTTAGAACCCACAAGGGTTGCAGAAATCCTCAAAGATCGGCCTTCATGGTTTCGTGATTGCCGAGCTGTGGATGTTCTGAATGTGCTGCCCACAGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCACCAACCACGTTGGCACCTGCCCGTGACTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGGAGCCTAGTGATCTGTGAGAGATCTCTTAAAAATACACAAAATGGTCCAACCATGCCTCCCGTGCAGCATTTTGTTCGAGCAGAGATGCTTCCTAGTGGGTACCTAATAAGACCATGTGAGGGAGGAGGTTCTATCATTCATATTGTTGATCACATGGATTTGGAGCCATGGAGTGTTCCTGAAGTACTGCGACCACTGTATGAATCATCAACAGTGTTGGCTCAGAAGACAACTATGGTGGCACTACGTCAACTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTCAGTGGCTGGGGAAGACGACCAGCAGCTCTTCGAGCACTTGGCCAGAGACTCAGCCGTGGCTTCAATGAGGCGATCAATGGGTTCACTGATGAGGGATGGTCAATGATCGGCAATGATGGTGTTGATGATGTTACAGTTCTAGTGAATTCATCACCTGACAAATTGATGGGTTTGAATCTTTCCTTTGCCAATGGATTTCCATCTATCAGCAATGCAGTCTTGTGTGCCAAAGCATCAATGCTATTACAGAATGTGCCTCCAGCCATACTATTGAGGTTCCTACGGGAGCATAGATCAGAATGGGCAGACAACAGCATGGATGCTTATTCAGCCGCTGCCATTAAAGTTGGTCCTTGTGGCTTACCAGGATCTCGTGTTGGAAACTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACCATAGAGCATGAGGAGTTTCTTGAAGTTATTAAGTTGGAAGGAATTGCACATTCCCCTGAAGATGCAATAATGCCCAGAGAAGTGTTTCTTTTGCAACTGTGCAGTGGAATGGACGAGAATGCTGTTGGAACCTGTGCTGAACTTATATTTGCTCCAATTGATGCATCATTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGATTCTGCAAAGGAAGCATCCAACCCAAATCGCACACTAGACCTGACATCTGCTCTTGACGTTGGCTCAACTGGAAACAGAGCATCAAATGATTATTCTGGAAATTCTGGTTCTATGAGATCTGTGATGACCATAGCATTTGAATTTGCCTTTGAAAGTCATATGCAAGATCATGTAGCATCAATGGCACGACAATATGTTCGCAGCATCATATCATCTGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTAAGTTCGCAAGCTGGGCTTAGAACTCCACTGGGTACCCCTGAAGCGCAAACACTAGCTCGCTGGATCTGCAATAGTTATAGGTGCTACTTGGGTGTCGAGCTACTGAAATCCAATAACGAAGGGAACGAATCTTTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTATGCTGTACAATGAAGGCATTGCCTGTGTTCACTTTCGCCAACCAGGCAGGGCTTGACATGCTGGAGACCACCTTAGTTGCTTTACAAGATATAACATTGGAGAAGATATTTGATGATCATGGCCGAAAGATTCTGTGCTCAGAGTTTACCCAAATTATTCAACAGGGTTTTGCATGCCTTCAAGGTGGTATTTGTCTCTCAAGCATGGGGCGACCCATCTCATATGAAAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTCGTTTGA 2514 0.461 MAMSCKDGKPGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTALPTKDTSCESAVTSGQRSLTTQHPPRDASPAGLMSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMVALRQLRQISHEVSQSNVSGWGRRPAALRALGQRLSRGFNEAINGFTDEGWSMIGNDGVDDVTVLVNSSPDKLMGLNLSFANGFPSISNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNSMDAYSAAAIKVGPCGLPGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDAIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSAKEASNPNRTLDLTSALDVGSTGNRASNDYSGNSGSMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTMKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFTQIIQQGFACLQGGICLSSMGRPISYERVVAWKVLNEEENAHCICFMFMNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01877 837 SUPERFAMILY Bet v1-like 159 348 - -
Phco10g01877 837 CDD bZIP 68 107 - -
Phco10g01877 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Phco10g01877 837 Pfam START domain 160 368 IPR002913 GO:0008289
Phco10g01877 837 Coils Coil 71 112 - -
Phco10g01877 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Phco10g01877 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Phco10g01877 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Phco10g01877 837 Gene3D - 194 372 IPR023393 -
Phco10g01877 837 SMART START_1 159 369 IPR002913 GO:0008289
Phco10g01877 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 837 IPR044830 GO:0003700
Phco10g01877 837 CDD START_ArGLABRA2_like 154 369 - -
Phco10g01877 837 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Phco10g01877 837 Pfam MEKHLA domain 694 836 IPR013978 -
Phco10g01877 837 Gene3D - 12 82 - -
Phco10g01877 837 MobiDBLite consensus disorder prediction 126 154 - -
Phco10g01877 837 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Phco10g01877 837 SUPERFAMILY Homeodomain-like 13 79 IPR009057 -
Phco10g01877 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Phco10g01877 837 MobiDBLite consensus disorder prediction 126 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01877 Phco-Chr10 40943495 40949792 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco10g01877 START 1.6e-53 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01877 10 40943495 40949792 Phco10g01877 10 40943495 40949792 ECH
Phco10g01877 10 40943495 40949792 Phco1g00225 1 1585159 1592320 PCT