Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01870 ATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGCCACAACTCCCGGACGTGCCCCTCGTCGCGGGGGGCGGGCGCCGGCGTGAAGCTCTTCGGGGTCAGGCTCACGGATGGATCAATCATAAAGAAGAGCGCCAGCATGGGAAACCTTAACCTCGCCTCCGCACACCACCATTCTTCTCCTTCTTCTTCCAACCTCGCCGCCTCCTCTCCCAATCCAAGCTCTCCCTGCTCCGACCCGCTCCATGAGCCCCACGGTTACTTGTCCGACGACCCCGCCCATATCTCCACCTTGGCTAACCGTCGCGGAGAAAGAAAAAAAGGTGTTGCATGGACTGAAGAAGAACATAGGCTGTTCTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTTGTATCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGGCAAAATCATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCAGATATGACTTCAGATCCACCTTCAGTGCCAGAAGAACAAGTGCTGCTTCCACCTTCTGAGAAGCCGCAACCTTGTAATGGAAAATCACAACCTTCACTAAATCTCTCCCTCAAATCAGAATTTGAACCCATGGAAACTACTTCTCAAGAAAACATGGAACAGGCCAATGAAACTATGATGGGATCAAACGGACTGACATCAATGGCTCCTCATGGATTCTTCCCCACTTATTTACCTGTTCCATTTCCCATATGGCCATCAACTGCAGCTACTTTTGAAGAAGTCAAGGGAGGAGAGACATCCCATCATCAGGTCCACAGGCCAATCCCAGTCATTCCCAAGGAACCTGTCAATGTTGACGAACTTGTGGGAATGTCTCATCTCAGCATTGGGGAAACACAGGTACGTGATAGAGAACCTTCCCCGCTTTCCTTAAAGTTGTTAGGGGAACCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCTGTTGGTGGTTCGGATTTAAAAACTGGCAAGAACAAAGCAATTCAAGCGGTTTGA 1065 0.5023 MTRRCSHCSNNGHNSRTCPSSRGAGAGVKLFGVRLTDGSIIKKSASMGNLNLASAHHHSSPSSSNLAASSPNPSSPCSDPLHEPHGYLSDDPAHISTLANRRGERKKGVAWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQNHATRRKRRSSLFDMVPDMTSDPPSVPEEQVLLPPSEKPQPCNGKSQPSLNLSLKSEFEPMETTSQENMEQANETMMGSNGLTSMAPHGFFPTYLPVPFPIWPSTAATFEEVKGGETSHHQVHRPIPVIPKEPVNVDELVGMSHLSIGETQVRDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLKTGKNKAIQAV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01870 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 159 IPR017930 -
Phco10g01870 354 NCBIfam myb-like DNA-binding domain, SHAQKYF class 106 158 IPR006447 GO:0003677
Phco10g01870 354 FunFam transcription factor MYB1R1 109 160 - -
Phco10g01870 354 PANTHER TRANSCRIPTION FACTOR KUA1 3 258 - -
Phco10g01870 354 MobiDBLite consensus disorder prediction 198 212 - -
Phco10g01870 354 ProSiteProfiles SANT domain profile. 111 159 IPR017884 -
Phco10g01870 354 SMART sant 107 157 IPR001005 -
Phco10g01870 354 MobiDBLite consensus disorder prediction 53 76 - -
Phco10g01870 354 CDD SANT 110 155 IPR001005 -
Phco10g01870 354 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Phco10g01870 354 MobiDBLite consensus disorder prediction 53 93 - -
Phco10g01870 354 MobiDBLite consensus disorder prediction 331 354 - -
Phco10g01870 354 SUPERFAMILY Homeodomain-like 105 160 IPR009057 -
Phco10g01870 354 MobiDBLite consensus disorder prediction 1 21 - -
Phco10g01870 354 MobiDBLite consensus disorder prediction 173 212 - -
Phco10g01870 354 MobiDBLite consensus disorder prediction 1 23 - -
Phco10g01870 354 Pfam Myb-like DNA-binding domain 110 155 IPR001005 -
Phco10g01870 354 Gene3D - 109 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01870 Phco-Chr10 40875304 40878929 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco10g01870 Myb_DNA-binding 9.1e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01870 10 40875304 40878929 Phco10g01870 10 40875304 40878929 ECH