Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01845 ATGAGCCGAGCCGAGCCGATCGGAGCTGACAAGCCAACGGTTCACGTCCCATATTCTTGGGCTGGGCAGACACAGGCCCAAAGTGGGGCCCACGAAATTGAAAATGAACGCATTTTTACTGTAGTGGATGGTGAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGTTGAGATAAAAGGAGATGTTGAATGTTTTCTTGTTTTGGAAACAGCTAGATCTACATTGGTAATTAAGGAGGAGTACTTTTCAACAGTCAATTGGATCTCTTTTAGTTTCAGTTCATCAGTGATTGTTGTCAATAATCAATCATCTATGGACGGTCTAAGTTGGGATTCCTCATCACAACTTGTTGGTAACATACCGAGCTTGTGGAGTAGTCATCCTCAAGACCTTGAAGGAGAGTATCATCATTCCTTGCCACACCTCTTTTCAAGTGTTCTCAATCAAACAGGTTATCCATATCCCGGTTCTGAAAAAGAAAGGGAGATGGTTCACCCATCCACTTCTGAGATAATGAGTATTTTGCCAAATACGAATCTGTCACAAAGAGCAGCAACCATGCCTGTGAAATCAGGAGCAGCTGGAGCCAGTTGGGGAGAAGCTTTAACATCCCAATCATGTCCGTCCCTTTCTGCCCATATGAACCAAACTAGCAATTATCTAACAGATTTCAACATGACCCACCAGCAAGAACACCTTATCAATGGTATACAAAACGGCAAGGCTACCTGTTCTCTCGAGTCACTTGATTGCTTGCTTTCAGATACTAAGAATGGCAACACAGACACCTCTATCGAAGATGATGGAATTTCCATGATGGTTTTATCTGACTGCAGAAACTTACGTAACTTCAATTATGGCAGTGCAGTTTCCTCGGGTGAATCTGAGAGCAATGCTTCCAATGCAAGAAACAGTGACATGCAGTATCCATCAGTGAATGAGCTGGATGAAACAGTGTCTCAAAGCTTCTCTGATCAATATATCAGTCAAGCAAGAGTTATAGATTCTGAAGTTATTTGCACAAAAGGGAGCAATTCGTGCTTCAGCGTTGCTCATAATTCTTCTGCCACCGAAGGTGGTTTCAGGCTTGTCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGAATAAGCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGTCACCTTCCTTTGAAGAACCTGATCCAGAGGCCGTAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGATTGGAAGTGGTGGAAAAGCCTAAGAGGAAGAATGTTAGGATATCAACTGATCCACAGACTGTGGCTGCCAGGGAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGAGCACAAGTAAAAGCACTAGAAAATATAGGTAACAAGCTTCAGACAATGAATAGTCCTCCTAACATAGCCTTCTCTTTCAACCCTTCTTTTCCCATACAAACACATTTCCCCGTCCAAAACCCTAGCGGCCACACCCACATCCAACATTCCAAGGGTTGGAAATGA 1644 0.4331 MSRAEPIGADKPTVHVPYSWAGQTQAQSGAHEIENERIFTVVDGEEERKKRERREKEERVEIKGDVECFLVLETARSTLVIKEEYFSTVNWISFSFSSSVIVVNNQSSMDGLSWDSSSQLVGNIPSLWSSHPQDLEGEYHHSLPHLFSSVLNQTGYPYPGSEKEREMVHPSTSEIMSILPNTNLSQRAATMPVKSGAAGASWGEALTSQSCPSLSAHMNQTSNYLTDFNMTHQQEHLINGIQNGKATCSLESLDCLLSDTKNGNTDTSIEDDGISMMVLSDCRNLRNFNYGSAVSSGESESNASNARNSDMQYPSVNELDETVSQSFSDQYISQARVIDSEVICTKGSNSCFSVAHNSSATEGGFRLVSETSPKSKRPRWNKHPGSSNINFQQPNSSVSPSFEEPDPEAVAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARERRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRAQVKALENIGNKLQTMNSPPNIAFSFNPSFPIQTHFPVQNPSGHTHIQHSKGWK 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01845 547 MobiDBLite consensus disorder prediction 366 404 - -
Phco10g01845 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 443 492 IPR011598 GO:0046983
Phco10g01845 547 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 263 540 IPR045843 GO:0003700|GO:0006355
Phco10g01845 547 MobiDBLite consensus disorder prediction 382 402 - -
Phco10g01845 547 Coils Coil 482 502 - -
Phco10g01845 547 Gene3D - 448 512 IPR036638 GO:0046983
Phco10g01845 547 SMART finulus 449 498 IPR011598 GO:0046983
Phco10g01845 547 Pfam Helix-loop-helix DNA-binding domain 453 492 IPR011598 GO:0046983
Phco10g01845 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 448 509 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01845 Phco-Chr10 40653973 40658956 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco10g01845 HLH 4.2e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01845 10 40653973 40658956 Phco10g01845 10 40653973 40658956 ECH
Phco10g01845 10 40653973 40658956 Phco1g00265 1 1902805 1904166 PCT