Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01808 ATGGAAGGTAACACGAGTGATTCAAGAAACACCACACAAGCTGCTTGTGCTGCTTGTAAGTACCAACGCAGGAAGTGCGGACCCAAGTGCATTCTTGCGCCGTTTTTTCCTCACCACCGCGAAAAACAGTTTCTCCGTGCCCATAGGCTTTTCGGGGTTGGAAAAATCACGAACATGATCAAGCCTCTGGATCCTGGTCGCAGAAACATAGCCATGGCCACCATTATTTACGAGTCTGATATGAGAGCGAAGGACCCTGTTGGGGGCTGCTTGAGGATCATTGAAAACTTACAATCTCAGCTCGAATATTCTCAAACTCAACTCCAACTTCTCCTTCAACACCTTGCCTTCTTCAGACCACCACCACCCTCCTCCTCATCCCATCCTTCTCTTTTACCACTTCAATTCCAAGAACAATCGAAATCGAAGGATCCGGTACAATTTCAAGAACAATCGAAAGATCCGTTCCAATTTCAAGATTTTCAAGAACAGAAAGATCCGTTACAATTTCAAGAACAGAAAGATCCTTATCTTTTATTGCAAGAAGATATGAAGTTGGAGACTGACAGCCAATATCAGGACGCATGGCGCCGGTTATGA 600 0.45 MEGNTSDSRNTTQAACAACKYQRRKCGPKCILAPFFPHHREKQFLRAHRLFGVGKITNMIKPLDPGRRNIAMATIIYESDMRAKDPVGGCLRIIENLQSQLEYSQTQLQLLLQHLAFFRPPPPSSSSHPSLLPLQFQEQSKSKDPVQFQEQSKDPFQFQDFQEQKDPLQFQEQKDPYLLLQEDMKLETDSQYQDAWRRL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01808 199 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Phco10g01808 199 MobiDBLite consensus disorder prediction 142 165 - -
Phco10g01808 199 Pfam Lateral organ boundaries (LOB) domain 15 110 IPR004883 -
Phco10g01808 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01808 Phco-Chr10 40428741 40429340 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco10g01808 LOB 7.4e-34 No_clan