Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01806 ATGAGTGATTCAAGAAGCAGTACACAAGCTTGTGCTGCTTGCAAGTACCAACGCAGGAAATGCGGACCCAAGTGCATTCTTGCGCCGTTTTTTCCTTATCAGCGCGAAAAACAGTTTCTCCGTGCCCATAGGCTCTTTGGAGTTGGAAAAATCACAAACATGATCAAGCCTCTGGATCCTGATCGCAGAAACATAGCCATAGCCACCATTATTTACGAGTCTGATGTGAGAGCCAAGGACCCTGTTGGGGGCTGCTTAAGGATCATTGAAAACTTACAATCTCAGCTCGCATATTCTCAAACCCAACTCCGACTTCTCCTTCAACACCTTGCCTTCTTCAGACCACCACCACCCTCCTCCTCATCCCATCCTTCTCTTTTACCACTTCAATTCCAAGAACAATCCAAATCGAAGGATCCGTTACAATTTCAAGATCAATCGAAAGATCCGTTCCAATTTCAAGATTTTCAAGAACAGAAAGATCGGTTACAATTTCAAGAACAGAAAGATCCGTATTTTTTATTGCAAGAAGATATGAAGTTGGAGATTGACAGCCAATATGAGGACGCCTGGCACCGGGTATGA 585 0.441 MSDSRSSTQACAACKYQRRKCGPKCILAPFFPYQREKQFLRAHRLFGVGKITNMIKPLDPDRRNIAIATIIYESDVRAKDPVGGCLRIIENLQSQLAYSQTQLRLLLQHLAFFRPPPPSSSSHPSLLPLQFQEQSKSKDPLQFQDQSKDPFQFQDFQEQKDRLQFQEQKDPYFLLQEDMKLEIDSQYEDAWHRV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01806 194 Pfam Lateral organ boundaries (LOB) domain 10 105 IPR004883 -
Phco10g01806 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 147 - -
Phco10g01806 194 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01806 Phco-Chr10 40424428 40425012 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco10g01806 LOB 3e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01806 10 40424428 40425012 Phco1g00307 1 2257261 2258703 PCT