Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01776 ATGGAAGCGCGAAGTCGCTCCGTGGAAGACATATTCGAGGATTTCAAGGGCCGAAGAGCAGGCATCATCAAAGCCCTCACCACCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCCAGTGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTAGGCATTAACTTTGCCAGGGATGGCATGCAGGAAAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTGCTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACGGACAGGAAACGACTATTCAGTATGATCAATGAACTACCGACAATATTTGAAGTTGTTGCTGGTGGAGCAAAGAAGCCACTTAAAGAGAAGTCATCAGTTTCAAACAACAGTGGAAACAAATCTAAGTCTATCACTAAAGTGCGGGTTTCTGAAACCCAGGGCAGACTGTCAAAATCATTGTTACAACAACCAAAGGATGAGGAAGAAGTACTAGAAGAGCAAGAGCAAGATGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAGTTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGCAAATGCGTGAAGATCACCCCTGCCAGGGCAGAGCACATCAAGCAATACAAGTGTCCATCGTGCAGTAACAAGAGAGCTCGCTAA 762 0.4462 MEARSRSVEDIFEDFKGRRAGIIKALTTDVEDFYSQCDPEKENLCLYGLPSEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFSMINELPTIFEVVAGGAKKPLKEKSSVSNNSGNKSKSITKVRVSETQGRLSKSLLQQPKDEEEVLEEQEQDDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01776 253 MobiDBLite consensus disorder prediction 182 196 - -
Phco10g01776 253 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Phco10g01776 253 MobiDBLite consensus disorder prediction 141 196 - -
Phco10g01776 253 FunFam PHD finger alfin-like protein 193 249 - -
Phco10g01776 253 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Phco10g01776 253 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Phco10g01776 253 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Phco10g01776 253 Pfam PHD-finger 201 250 IPR019787 -
Phco10g01776 253 PANTHER CPG BINDING PROTEIN 5 253 IPR045104 GO:0006355|GO:0042393
Phco10g01776 253 SMART PHD_3 200 248 IPR001965 -
Phco10g01776 253 CDD PHD_AL_plant 200 250 IPR044104 -
Phco10g01776 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Phco10g01776 253 MobiDBLite consensus disorder prediction 143 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01776 Phco-Chr10 40202093 40206560 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phco10g01776 Alfin 4.3e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00366 1 2806827 2810775 Phco10g01776 10 40202093 40206560 ECH
Phco7g00614 7 4650800 4657816 Phco10g01776 10 40202093 40206560 ECH
Phco10g01776 10 40202093 40206560 Phco10g01776 10 40202093 40206560 ECH
Phco10g01776 10 40202093 40206560 Phco1g00366 1 2806827 2810775 PCT