Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01743 ATGAAAATTCAGTGTGATGTGTGTGAGAGAGCTCCAGCAACAGTGATTTGTTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAGCTCGCAAGCAAGCACCAAAGGCTTCTTCTTCAATGTCTATCAAACAAGCTTCCCAGATGTGACATTTGCCAAGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGACTGTGATGAACCAATTCATTCACCTGGAAGCCTTTCTGCAAACCACCAGCGCTTCCTAGCTACTGGTATCCGAGTGGCTTCAAGTTCTAATTGCACCAAAGACAATGAAAATAGTCACCTGGAGCCTCCCAATAGGAATGCACAACAAGTTTCCACGAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGCCTGTTGATGACTTTTTGGAATTAACAGGCTATGAATCACCTGAGAAAAAGGAATCTCTACAATTTGGAGAGCTGGAATGGCTTACAGATGCAGGTATTTTTGGTGAACAATTTATTCAGGAAGCCTTGGCTGCAGCTGAAGTACCTCAGCTTCCAGTGACTCATAATAGCAGCAGTGTTGCCTCATACAGAACCTCCAAGTCCTACATGTCACAGAAAAAGCCTAGGATTGAAGTCCTAAATAATGATGATGACGATGAGTACTTCACTGTGCCTGATCTTGGCTAA 723 0.4398 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSPGSLSANHQRFLATGIRVASSSNCTKDNENSHLEPPNRNAQQVSTKVPSQQVPSFTSSWPVDDFLELTGYESPEKKESLQFGELEWLTDAGIFGEQFIQEALAAAEVPQLPVTHNSSSVASYRTSKSYMSQKKPRIEVLNNDDDDEYFTVPDLG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01743 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phco10g01743 240 CDD Bbox1_BBX-like 5 47 - -
Phco10g01743 240 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Phco10g01743 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Phco10g01743 240 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Phco10g01743 240 MobiDBLite consensus disorder prediction 109 129 - -
Phco10g01743 240 Gene3D Classic Zinc Finger 1 94 - -
Phco10g01743 240 CDD Bbox1_BBX-like 57 98 - -
Phco10g01743 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phco10g01743 240 SMART bboxneu5 52 99 IPR000315 GO:0008270
Phco10g01743 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01743 Phco-Chr10 39984151 39985906 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phco10g01743 zf-B_box 1.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01743 10 39984151 39985906 Phco10g01743 10 39984151 39985906 ECH
Phco10g01743 10 39984151 39985906 Phco9g00603 9 4372325 4375266 PCT