Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01739 ATGAACCTATGGCCATTCCGATTTGGGACTCTACTTGAGGTTGTGGTTTTCTCATGCTTGTGGTTGCAAGTTTCAAGTCTTGGCTCCATGTCTTCCATTGCCGTCTCTTATGGCGACAAAGGGTCCGCGTTTTGTGGCTTGAAATCGGATGGATCTCACACTGTAAACTGTTATGGGATGAACTCAGCCATAATTTATGGAACACCAATTCATTTTCCATTCTTTGGTCTAACAGCCGGTGATGGCTTTGTGTGTGGGCTTTTGATGAGTTCTAGTCAACCGTATTGCTGGGGTAGCAGTAGCCATGTTGAAATGGGTGTGCCACAACCTATGGTGAAGGGAGCTCAGTACCTAGAGATCAGTGCTGGGGATTATCACGTTTGTGGATTGAGGAAACCATTGACTGGAAGACACAGGAACACTTCTTTGGTTGATTGTTGGGGCTACAACATGACAAATAACTATGTGTTTGAAGGGCAGGTTCAATCCATCTCAGCAGGTTCTCAATTCAATTGTGGCTTGTTTTCTCAGAACAGAAGTGTGTTCTGCTGGGGGGACGAGACAAGTAGCCAAGTTATTAATATGGTCCCTAAAGGCATGAGGTTCCAGAAGATCTCTGCGGGAGGGTACCATGTGTGTGGAATCTTAGAAGGGGTGGATTCTAGAGCTGTTTGTTGGGGGAGGAGCTTGGTGGATTTGGGGGAAGAACTTTCAATTTCGTTGACACGTTCAGGACAAGGACAAGGTAACGTTGAATTGGCTCCCAGTGATCCCATGCTTTCTGTGGTGGGAGGGAAGTTCCATGCATGTGGCATTAAGAGCTATGATCGTGGAGTGGTTTGTTGGGGCTATAGTTTCAAAGCAGGCACCCGAGTTCCTAGTGGGATTAGGGCCTTTGAGATTGGTGCTGGGAATTATTTTACCTGTGGAGTACTTGTTGAGAAATCCCTTATGCCTGTTTGTTGGGGTGTTGGCTTCCCCACTTCTCTCCCTTTGCCTGTCTCACCAAGAATGTGTAGGTCTACTCCATGTCCTCCAGATTACTTTGAAACCTCACAAAATGGTCTTTGCAAGTCACCAGATTCCCATGTTTGCATGCCATGCAGTGCTGCTTGTCCTCCTGAGATGTATATGAGAAGTGGATGCAATTTGAAATCTGACATACTTTGTGAATATAATTGTTCTCTGTGTTCCTCACCTGAATGTCTCTCCAATTGCTCCACTTCCTATTCCAATGATGCCTCTGGCAAGAGAAGTGAAAAATTTTGGTCTCTGCAACTGCCGGTGATTATTGCTGAGATAGCTTTTGCTGTTTTCTTTGTTTGTATTGTGTCCATAACTGCGGTGTTGTATGTTCGCTACAAGCTAAGAGATTGTCAGTGTTCTTCTTCAGCGAGAGGGTCAAAGGAGAAGAAACTAAAAGGGAGTTCCTCACACCAAAAGGAGAAATCCAAGGTCCGACCAGACTTGGAGGAGTTCAAGATTAGGAGAGCACAGATGTTCCCCTACGAGGAACTTGAACGAGCAACCAGTGGATTCAAAGAAGAGTCCATAGTGGGGAAGGGAAGTTTCTCTTGTGTGTTCAAAGGGGTTCTCAAAGATGGGACTGTTGTTGCTGTTAAGAGGGCCATAATGTATCCCAACGTGCAGAAGAATTCCAAGGAGTTTCACACTGAGCTTGACTTGCTTTCTAGGTTGAACCATGCACACTTACTCAATCTACTAGGCTACTGTGAAGAGGGTGGAGAGAGACTCCTGGTTTATGAGTACATGGCTCATGGCTCATTGCATCAACACCTTCATGGGAACAAAGTGATGAAAGAGCAAATGGATTGGGTGAGAAGGGTAACAATTGCAGTCCAAGCAGCTCGGGGAATCGAATATTTGCACGGCTATGCTTGTCCACCAGTGATTCATAGAGACATAAAGTCTTCAAACATCCTCATTGATGAAGAACACAATGCCAGAGTGGCTGATTTTGGTTTGTCACTACTTGGTCCTGCAGATAGTAGCTCCCCACTGGCCGAACTACCAGCTGGGACTCTTGGCTATCTTGATCCTGAATACTATAGGCTTCATTACCTTACCACAAAGTCTGATGTATACAGCTTTGGCGTTCTACTTTTGGAGATATTGAGCGGCAGAAAAGCTATTGACATGCAATATGAAGAAGGTAACATTGTTCAATGGGCGGTGCCTCTGATCAAGTCAGGAGATATAGCTTCAATCTTGGATCCAGTTTTGAAGCCTCCTGCTGATCTTGATGCATTGAGAAGAATAGCTAACGTGGCTTGTAAAAGTGTGAGAATGAGAGGGAAGGATAGGCCGTCAATGGACAAAGTGACAACAGTTTTGGAGAGAGCTCTTGCACAGTTGATGGGGAGTCCTTGCATTGAGCAGCCAATTTTGCCAACTGAGGTGGTTTTAGGAAGCAACAGACTGCACAAAAAATCATCTCAAAGGTCTTCAAACAGGTCAGCCTCAGAAAGCACTGATGTGGAGGATCAGAGGTTTGAGTTTAGAGCACCCTCATGGATCACTTTCCCCAGTGTGACTTCTTCTCAAAGAAGATCAGGCTCAGAGGCTGATGTTGAGGGAAAAAATATAGAAGTGAGGAATTTGGGCAATGTTGGAGGTGGTGATGCTCTAAAAAGTCTGGAGGAAGAGATTGGTCTTGCCTCTCCTCGAGAGAAACTCTTCTTGCAACACAACTTCTAA 2718 0.4522 MNLWPFRFGTLLEVVVFSCLWLQVSSLGSMSSIAVSYGDKGSAFCGLKSDGSHTVNCYGMNSAIIYGTPIHFPFFGLTAGDGFVCGLLMSSSQPYCWGSSSHVEMGVPQPMVKGAQYLEISAGDYHVCGLRKPLTGRHRNTSLVDCWGYNMTNNYVFEGQVQSISAGSQFNCGLFSQNRSVFCWGDETSSQVINMVPKGMRFQKISAGGYHVCGILEGVDSRAVCWGRSLVDLGEELSISLTRSGQGQGNVELAPSDPMLSVVGGKFHACGIKSYDRGVVCWGYSFKAGTRVPSGIRAFEIGAGNYFTCGVLVEKSLMPVCWGVGFPTSLPLPVSPRMCRSTPCPPDYFETSQNGLCKSPDSHVCMPCSAACPPEMYMRSGCNLKSDILCEYNCSLCSSPECLSNCSTSYSNDASGKRSEKFWSLQLPVIIAEIAFAVFFVCIVSITAVLYVRYKLRDCQCSSSARGSKEKKLKGSSSHQKEKSKVRPDLEEFKIRRAQMFPYEELERATSGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMYPNVQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGNKVMKEQMDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWAVPLIKSGDIASILDPVLKPPADLDALRRIANVACKSVRMRGKDRPSMDKVTTVLERALAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQRSSNRSASESTDVEDQRFEFRAPSWITFPSVTSSQRRSGSEADVEGKNIEVRNLGNVGGGDALKSLEEEIGLASPREKLFLQHNF 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01739 905 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 343 390 IPR001368 GO:0005515
Phco10g01739 905 FunFam Serine/threonine-protein kinase-like protein CR4 26 193 - -
Phco10g01739 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Phco10g01739 905 Gene3D Transferase(Phosphotransferase) domain 1 591 795 - -
Phco10g01739 905 ProSiteProfiles Protein kinase domain profile. 513 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01739 905 SMART serkin_6 513 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01739 905 SUPERFAMILY RCC1/BLIP-II 26 229 IPR009091 -
Phco10g01739 905 Gene3D Phosphorylase Kinase; domain 1 483 590 - -
Phco10g01739 905 Gene3D - 73 342 IPR009091 -
Phco10g01739 905 SUPERFAMILY Protein kinase-like (PK-like) 493 785 IPR011009 -
Phco10g01739 905 MobiDBLite consensus disorder prediction 814 835 - -
Phco10g01739 905 Pfam Protein kinase domain 513 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01739 905 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 92 133 IPR000408 -
Phco10g01739 905 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 12 905 - -
Phco10g01739 905 SUPERFAMILY RCC1/BLIP-II 250 338 IPR009091 -
Phco10g01739 905 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Phco10g01739 905 FunFam Receptor protein kinase CRINKLY4 591 792 - -
Phco10g01739 905 FunFam serine/threonine-protein kinase-like protein CCR1 483 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01739 Phco-Chr10 39955671 39958388 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Phco10g01739 Pkinase 1.3e-42 CL0016