Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01688 ATGACTCACCCCTATTGCTCCAATGACTTCAATGCCTGGTTTGACCTCAATTCTCCATTCATTTTCTCCTCTTCTTCATCACCTTGCTCCAACAACCCTCCATTCTATTTTCCTTCTACTTATCATCATAACTTCACAAGTGGCATCTCTTTTACTCCCCATCAATCTTCTCCCCCCAAAGAAGCACTTCCTCTCCTTAACCTAAGCCCTGCAAGAGGTGAAGATCTTGAATCTTGCTTTAGTATCATGAAAGTCAACAAAGAGAAGGAGAGAGAACTAAGCATATTGTCTAGTAATAATAACTCTTTGGATGATGATGAGACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAAGCACTACCACTTCGTCTGATTTAACTGTTGACTTTTTTGGCTTATTCCCAAACAAAGAAAAAGTCACGGTTGCTTCTGAGTATTCTCCTACCAGAATTAACAAGGGTCAGTATTGGATCCCTACCCCTGCTCAAATTCTCATCGGTCCAACACAGTTCTCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAGGGACCAGAGTCCCTAAGGGGAACTCAACCAACAGCAATGCTTAGACTCCCTTGCTATTGTTGTGCAGCTGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTTAGAACCCTCCAAACTCATTACAAGAGAAAGCATGGAATCAAACCCTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGATTGGAGGACCCATGAGAAGAACTGTGGGAAGCTATGGTATTGCTCTTGTGGCTCCGATTTCAAGCACAAAAGATCTCTTAAAGATCATATCAAGGCATTTGGAAATGGACATAAAGCTTATGGAATCGACTGTCTTGATCAAGATGATGAAGCTGGCTCTGAAATTGAGCAAGAAAGTGTTAATGAATCTTTAGTTTCAAGTCATAGTTGA 1017 0.4208 MTHPYCSNDFNAWFDLNSPFIFSSSSSPCSNNPPFYFPSTYHHNFTSGISFTPHQSSPPKEALPLLNLSPARGEDLESCFSIMKVNKEKERELSILSSNNNSLDDDETVTVALHLGLPSTTTSSDLTVDFFGLFPNKEKVTVASEYSPTRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAAGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCLDQDDEAGSEIEQESVNESLVSSHS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01688 338 Gene3D Classic Zinc Finger 170 193 - -
Phco10g01688 338 Gene3D Classic Zinc Finger 253 332 - -
Phco10g01688 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Phco10g01688 338 PANTHER ZINC FINGER PROTEIN WIP2 29 328 IPR043584 GO:0003700|GO:0010468
Phco10g01688 338 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Phco10g01688 338 Coils Coil 86 106 - -
Phco10g01688 338 FunFam Zinc finger protein WIP2 224 306 - -
Phco10g01688 338 SUPERFAMILY beta-beta-alpha zinc fingers 237 275 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01688 Phco-Chr10 39410332 39417400 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco10g01688 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01688 10 39410332 39417400 Phco10g01688 10 39410332 39417400 ECH
Phco2g01569 2 45959402 45961726 Phco10g01688 10 39410332 39417400 ECH
Phco6g00266 6 2565774 2567952 Phco10g01688 10 39410332 39417400 ECH
Phco10g01688 10 39410332 39417400 Phco9g00659 9 4905710 4907947 PCT