Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01686 ATGAATAGTTCGGGTTTGGGTGGTGGCTTTTTGTCTGGCCCCAGTGGGGGGATTTTGGACTTGGAATCTTCATTTCATAGACACCAACAGACTCAACTAGGTCATCCATCAATTACTAGTCAACAGCAGTTGAATATCATGAGTAGTCTTGAAAGTGATCACCCCATTGGCCTAATCGAAGTGAAAAATTTGAATGCGGCGTTGAAATTTGGTAAAGGAAAGGCAATTGCTCCTTCCGATAGTAATGAGTTGAGTGACGAGGATGAGCCTAGCTATGCAGAAGAAGGGAATTGTGAGAACCTGGATGGTGGTAAGGGCAAAAAGGGGTCTCCTTGGCAGCGAATGAAGTGGACAGATAATGTGGTTAGGCTTCTTATAACAGTGGTGAGTTGTGTGGGTGATGATGGCACTATTGCAGGCATGGATGGTCACAAAAGGAAATCTGGGGTTTTACAGAAGAAGGGCAAGTGGAAAACAGTCTCCAAGATAATGATAAGCAAGGGTTGTCATGTGTCGCCACAGCAGTGTGAGGACAAGTTCAACGACTTAAATAAGAGATACAAGAGGTTAAATGACATACTTGGAAGGGGAACTTGTTGTCAAGTGGTTGAGAATCCGGCATTAATGGATTCAATACCTAACCTGTCAGCTAAGATGAAGGATGACGTTAGGAAGATCCTGAGCTCAAAACACTTGTTTTATAAGGAGATGTGTGCCTACCATAATGGGCAAAGGATACCAAATTGTCATGAACTTGATTTGCAGGGTTATTCTATGGAGCATGGGAGGGACTCAACAAGAGATAATAATGGATCTGAGGATGAACATGAGAATAACAATGATAGCGAGGAGGATGAGTTGGATGATGAAATTAATATTAATGCACACGAAGATGGAGGGAGGATGCAGGAACTCTGTGATAGAAATATATTAAGTGAGGAGGATGGCCATTTTGGCCCACAAACTTCTCGGATGGACAAATTTGAGGTTGAAATGGCAAGAGTTTTTCAAGACCCCACAAAGTCATTACGTGAACAAAGAGAGTGGATTAAAATCCAGATGTTGCAGCTTCAAGAGCAAAATATCAGCTACCAAGCCCAAACTCTTGAACTTGAGAAACAGCGGCTTAAGTGGTTAAGATATTGCAGCAAGAAGGACAGAGAACTGGAGAGGCTGAGATTGGAGAACAAAAGAATGAAGTTGGAAAACGAGCGCAGGATCTTGAAACTGAAACAAAAACAGCTAGAGGTAGATTTCAGTACATCTGAGATGTCTTTAGACCCTGCCTCTATAGGAATCAACCTGCCGCAGGGGAGGGAGCATGTCAGCTTAGGCAGACAACAGTAG 1347 0.4298 MNSSGLGGGFLSGPSGGILDLESSFHRHQQTQLGHPSITSQQQLNIMSSLESDHPIGLIEVKNLNAALKFGKGKAIAPSDSNELSDEDEPSYAEEGNCENLDGGKGKKGSPWQRMKWTDNVVRLLITVVSCVGDDGTIAGMDGHKRKSGVLQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTCCQVVENPALMDSIPNLSAKMKDDVRKILSSKHLFYKEMCAYHNGQRIPNCHELDLQGYSMEHGRDSTRDNNGSEDEHENNNDSEEDELDDEININAHEDGGRMQELCDRNILSEEDGHFGPQTSRMDKFEVEMARVFQDPTKSLREQREWIKIQMLQLQEQNISYQAQTLELEKQRLKWLRYCSKKDRELERLRLENKRMKLENERRILKLKQKQLEVDFSTSEMSLDPASIGINLPQGREHVSLGRQQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01686 448 MobiDBLite consensus disorder prediction 260 276 - -
Phco10g01686 448 Gene3D - 117 189 - -
Phco10g01686 448 PANTHER F16F4.11 PROTEIN-RELATED 1 421 - -
Phco10g01686 448 Pfam Myb/SANT-like DNA-binding domain 114 239 IPR044822 -
Phco10g01686 448 Coils Coil 273 293 - -
Phco10g01686 448 Coils Coil 354 374 - -
Phco10g01686 448 Coils Coil 382 418 - -
Phco10g01686 448 MobiDBLite consensus disorder prediction 76 112 - -
Phco10g01686 448 MobiDBLite consensus disorder prediction 260 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01686 Phco-Chr10 39388433 39389779 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco10g01686 Myb_DNA-bind_4 1.8e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01686 10 39388433 39389779 Phco10g01686 10 39388433 39389779 ECH