Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01649 ATGCTTTCCACCAACTCTCTCCTGCAAAATTTTGGAGGTCCTATCTCGGTGTTTTCAGATCAGAACCAAGTGGTGGAGGGGATTGAGTTTGATGATTCATCTTCTCCTTCTTCTGGTACAAGCTCAAATGGAGAATCGACTAAGTACTCCAACAACATCCTTAGATACATAAGCGACATCCTCATGGATGAGGAAGACGACCTGGAGAGCAAACCCTGCATGTTGCAGGAATGTTTGAGACTCCAGGCTGCCGAAAAATCCTTCCTTGATGTCCTTGTCCATCACAGCCACCCTTCTTCTTTCAGTGGTGAAATCGTAGAGTCTGATGAAAATTTTGGTCGCACTGCTAGTTTTGAGAGCAATGGCAGCTGCACTACTGATAATTCATGTGACTCTGACTTGGTCAACGGTGTAGGTGAATTTGACTCTTCTTTTCTACTACAGCAAACCCATCTAGTTTATTCCCCAGATGTAGTTGATGCATTTAGGGTTCGTGATGGAACCTGGAATCTCGTTCAGTCTCATACAAAGCCGGTGATGGTGGAAGAGGGTTGTTCAGGTTCAGCATCCAGAGAAAAGAGAAGCCACCAGAATGATGATGCTTTTCATGAACAAGATGGAAGAAGAGGCCGCAAGGTTTCAGCTGTCTTTTCTGATGAGTTAGAGCCGCCAGAGATCTTAGATGAGGTGTTGCTTTGTCAAATTGGAAGAAGTGGATCTGGTTCTGAACCATCACAAGGTGTTGATTTAAGAGGGTCCAATGGAAAGGCAACACGCTCACGTCCAAAGAAAGGGTCCACCAAAGCAGGTACAGCAGCTGTTGATTTATGGACCCTTCTAACTCAATGTGCACAGGCAGTGGCAAGCTTTGACCAAAGGAATGCAAATGAGTTACTCTGCCAGATTAGGCAACACTCTTCACCTTATGGGGATGGACTCCAGCGTTTGGCTCATTACTTTGCCAATGGCCTTGAGATAAGGTTGGCTGCTGGGACGCCATCATATGTGCCACTGGAAGTGGCAACTGCTGCTGATATGTTGAAAGCTTACAAACTATTTGTTACATCCTCTCCTTTGCAAAGGATGTCAAATTATTTGGCAAACAGGACAGTCATTAGTCTTGTGAAAAATGAGAGCAGCGTTCATATTATTGACTTTGGCATTTGCTATGGTTTTCAGTGGCCCTGCCTGATCAAAAGGCTCTCAGAAAGACATGGTGGTCCTCCAAGGCTTCGTATAACAGGAATTGATCTTCCTCGGCCAGGATTTCGGCCTGCTGAAAGGGTTGAGGAGACAGGGCGGCGTTTGGAAAACTACTGCAAGAAGTTCAATGTCCCTTTTGAGTACAATTGCCTTGCACAGAAATGGGAAACCATAAAACTTGCAGATCTCAAGCTAGACATGAATGAAGTAACTGTTGTTAGCTGTTTCAACCGGCTGAAGAACCTGCCTGATGAAACTGTGGCAGTGAACTGTCCAAGAGATGCAGTGTTAAAGTTGATTAGGAAGATCAATCCAAACATCTTCATCCATGGGGTGGTCAATGGCACTTATAGTGCACCTTTTTTCCTGACACGGTTCAGGGAAGCGCTATACCACTTCTCGTCACTGTTTGATATGTTTGAGGTTAATGTACCTCGTGAAGACTCGCTAAGAGTGATGTTTGAGAAAGGGTTTCTTGGAAGAGATGCCATCAATGTTATAGCGTGTGAGGGGGCTGAGAGAGTTGAGAGACCGGAGACCTACAAGCAGTGGCACGTTAGGAACCTGAGAGCTGGGTTCAAACAAGTTCCTTTGGATCCTGAGTTGGTGAATTATGCGAAACAAATGGTGAAGAAGGAATATCACAAAGATTTTGTAGTGGCTGAGGATGGCAAGTGGATTTTGCAGGGGTGGAAAGGGCGAATTCTGAATGCCATTTCTGCATGGGCTCCTGCTTGA 1941 0.4529 MLSTNSLLQNFGGPISVFSDQNQVVEGIEFDDSSSPSSGTSSNGESTKYSNNILRYISDILMDEEDDLESKPCMLQECLRLQAAEKSFLDVLVHHSHPSSFSGEIVESDENFGRTASFESNGSCTTDNSCDSDLVNGVGEFDSSFLLQQTHLVYSPDVVDAFRVRDGTWNLVQSHTKPVMVEEGCSGSASREKRSHQNDDAFHEQDGRRGRKVSAVFSDELEPPEILDEVLLCQIGRSGSGSEPSQGVDLRGSNGKATRSRPKKGSTKAGTAAVDLWTLLTQCAQAVASFDQRNANELLCQIRQHSSPYGDGLQRLAHYFANGLEIRLAAGTPSYVPLEVATAADMLKAYKLFVTSSPLQRMSNYLANRTVISLVKNESSVHIIDFGICYGFQWPCLIKRLSERHGGPPRLRITGIDLPRPGFRPAERVEETGRRLENYCKKFNVPFEYNCLAQKWETIKLADLKLDMNEVTVVSCFNRLKNLPDETVAVNCPRDAVLKLIRKINPNIFIHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEVNVPREDSLRVMFEKGFLGRDAINVIACEGAERVERPETYKQWHVRNLRAGFKQVPLDPELVNYAKQMVKKEYHKDFVVAEDGKWILQGWKGRILNAISAWAPA 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01649 646 MobiDBLite consensus disorder prediction 238 253 - -
Phco10g01649 646 MobiDBLite consensus disorder prediction 180 210 - -
Phco10g01649 646 MobiDBLite consensus disorder prediction 187 210 - -
Phco10g01649 646 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 206 637 IPR005202 -
Phco10g01649 646 Pfam GRAS domain family 278 643 IPR005202 -
Phco10g01649 646 MobiDBLite consensus disorder prediction 238 267 - -
Phco10g01649 646 ProSiteProfiles GRAS family profile. 267 644 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01649 Phco-Chr10 39167394 39169334 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco10g01649 GRAS 6.4e-110 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01649 10 39167394 39169334 Phco10g01649 10 39167394 39169334 ECH
Phco10g01649 10 39167394 39169334 Phco9g00711 9 5247727 5249841 PCT