Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01629 ATGGAACTTTTGAAACCTCTGCATCCTCACCATGCACCCAATTTGTGCCTTTCCTTCCACGGCCACCCCTCTTCTTCTCAATCTCAATCTCAGCTTCCCCTCCCCATGCCTCGCAAGGTTCATGTCGCTGTTGGCAAATCGATTGATAAAGCTGTCACCTTGCTTCAATGGACCTTCAACCACTTTCAGAATGCTGAAATCGTTATATTACATGTTTATCAACCTTCTCTCACCATCCCCACCCTATTGGGGAAATTGCCTGCATCACAGGCTAGTCCTGCTGTGGTGTCTGCTTTTCGAAGTGTGGAGAGAGAACAGACCATGAAGCTTTTAGACAAGTACTTGACCATTTGCCGCACAGCTAGGGTTAAGGCGAGCATTATAGTTACTGAAGCTGATCAAGTCCAAAAAGGAATTGTTGATTTGGTCGTTAAGCACAGTATTCAGAAGCTTGTCATTGGAGCAGTGCCAGAAAATTGCATGAAAGTGAAAAGGAATTCTGGTAAAGCAAATTACACTGCCAAAAATGCTCCTCCATTCTGTGAAGTGTGGTTTATCTATAAAGGAAAAGTTATTTGGACAAGAGAGGCTTCTGAGACACCATGTTCTTCATCCTCGTGTGCTCAACCTGAGATTGCCACCGCAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAACTATTTGACTCGGAATGTCTTCAACCAAATTCGGCAAGATCTGCTACTGGTTTTGGAATTAGAAGTTGTGTTCATGGGGAAATCACGGAAACGGAAGCCACTTTTTCATCCAAAGCATCCAGTTGTGGCAGTCATTGTTCCTCCCAAAATTCTTCTAGGGCTCATTTAGATACATACTTAGAGGCCATGGAAGAAAAAATTAACAAACAACTTATTGAAACCAAGATAGAAGCCGAGGCAGTATCAGATGAAGCCTTTGCTAACCTATTTAAGTGTGAGAGGTTAGAAGTTGAAGCCATGGAAGCCATCAGGAAGGTCAATTTGTTTGAATCTGCCCATGTTCGTGAAGTAAAGCTTAGAAAAGAGGCTGAGGATGCACTGAGGGCTGCGGTACAAGAACAACAAAAGCTCTTGAATGAGAGTGAAGAAATTGCTAGTGAGCTTCAAATGACCATGAGAAATATTGCGCTGTTAGATAGTCATGCTCAGGAAGCAAACCGTAGGCGTGATGAAGCTGCAGATGAACTATCACTAATTCAAGAGTCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATAAGGAGACAGAAAATGGAAGCCCTACGTTGGCTTGAGCGGTGGAGAAGTCGAGGACAAGTTGGAGCAGCTCATTGCAATGGGATCATTGGGTTGCCTGAAGAATTACCTGAGTTAGCAGAGTTTTCATCATCAGATCTTGAAAATGCCACATGTAATTTTTCCAATAGCTTTAAAATTGTGCAAGGTGGATTTGGTTGTATATACAAGGGGGAAATGTTGGGTAGGACTGTTACTATAAAAAAGTTCCATCAACATAACATGCAAGGACCAATGGAGTTTCGTCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCACTTAATCACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGCAACAATTCTCCTTTGACATGGAATACCCGAGCGCGAATGATTGCTGAAATCGCTAGTGCTCTCTGCTTCCTACATTCTTTTAAACCCGAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCCTCACTTGGTTGCAAGATATGTGGATTTGGGTTCTGCAGTCTGGTAAGTGAGGAGTCTCTCCTCCGTCCTAGTTTCCGTTTGAGCACTGAACCAAAGGGTGCTTTCACATATGCGGATCCAGAGTTTCATAGAACTGGAATACTTACAACAAAGTCTGACATCTACTCCTTTGGGCTCATCATTTTGCAACTCCTCACTGGTAAAACTCCAGTTGGGTTAGCAGCTCTTGTTCGCAATGCAGCTTCATGTGGAAAATTGTCTTCAATTCTGGATTCTTCAGCAGGAGAATGGCCCTCGCCTGTGGCATCGCGATTGGTTGAACTAGGATTGCAATTCTGTCAACAAAATCGTAGAGACAGACCAGATTTAACTCCTACACTTGTGAGAGAATTGGAGCAGATGCATGCTTCAGAAGAGCGACCAGTGCCATCTTTTTTCTTATGTCCAATACTTCAGGAAATAATGCATGATCCTCAAGTTGCGGCTGACGGATTTACCTATGAAGGAGATGCCATACGTGAATGGTTGGAAAATGGGCATGACACTTCTCCCATGACTAATTTGAAATTGAATCACCTGTTTCTTACTCCCAACCACGCACTACGACTTACCATCCATGACTGGCTTTGCAAATCTTGA 2460 0.4325 MELLKPLHPHHAPNLCLSFHGHPSSSQSQSQLPLPMPRKVHVAVGKSIDKAVTLLQWTFNHFQNAEIVILHVYQPSLTIPTLLGKLPASQASPAVVSAFRSVEREQTMKLLDKYLTICRTARVKASIIVTEADQVQKGIVDLVVKHSIQKLVIGAVPENCMKVKRNSGKANYTAKNAPPFCEVWFIYKGKVIWTREASETPCSSSSCAQPEIATAESLRCRSFQYGKNELFDSECLQPNSARSATGFGIRSCVHGEITETEATFSSKASSCGSHCSSQNSSRAHLDTYLEAMEEKINKQLIETKIEAEAVSDEAFANLFKCERLEVEAMEAIRKVNLFESAHVREVKLRKEAEDALRAAVQEQQKLLNESEEIASELQMTMRNIALLDSHAQEANRRRDEAADELSLIQESISTLWQERQQIRRQKMEALRWLERWRSRGQVGAAHCNGIIGLPEELPELAEFSSSDLENATCNFSNSFKIVQGGFGCIYKGEMLGRTVTIKKFHQHNMQGPMEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLGCKICGFGFCSLVSEESLLRPSFRLSTEPKGAFTYADPEFHRTGILTTKSDIYSFGLIILQLLTGKTPVGLAALVRNAASCGKLSSILDSSAGEWPSPVASRLVELGLQFCQQNRRDRPDLTPTLVRELEQMHASEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLNHLFLTPNHALRLTIHDWLCKS 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01629 819 SMART Ubox_2 752 815 IPR003613 GO:0004842|GO:0016567
Phco10g01629 819 Pfam U-box domain 749 818 IPR003613 GO:0004842|GO:0016567
Phco10g01629 819 Gene3D HUPs 36 156 IPR014729 -
Phco10g01629 819 ProSiteProfiles Protein kinase domain profile. 475 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01629 819 PANTHER OS02G0152300 PROTEIN 40 813 - -
Phco10g01629 819 SUPERFAMILY RING/U-box 739 818 - -
Phco10g01629 819 Coils Coil 384 411 - -
Phco10g01629 819 SUPERFAMILY Protein kinase-like (PK-like) 458 737 IPR011009 -
Phco10g01629 819 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 750 819 IPR013083 -
Phco10g01629 819 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 36 157 - -
Phco10g01629 819 CDD STK_N 39 189 - -
Phco10g01629 819 Coils Coil 349 380 - -
Phco10g01629 819 ProSiteProfiles U-box domain profile. 748 819 IPR003613 GO:0004842|GO:0016567
Phco10g01629 819 CDD RING-Ubox_WDSUB1-like 750 805 - -
Phco10g01629 819 Pfam Protein tyrosine and serine/threonine kinase 480 731 IPR001245 GO:0004672|GO:0006468
Phco10g01629 819 Gene3D Transferase(Phosphotransferase) domain 1 548 749 - -
Phco10g01629 819 Gene3D Phosphorylase Kinase; domain 1 453 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01629 Phco-Chr10 39027420 39031207 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Phco10g01629 PK_Tyr_Ser-Thr 1.8e-33 CL0016