Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01607 ATGAAGAGAATCAGAGAAGAGGGTGAGTTAGAGAACATGAGTAACTGTTTGATGCTGTTGACCAAAGTTGGTGTGAGTGAAACCAACCCAGCATCAAAGGGTAGAGAGTTAAGGGACAGTGATATTGGTGATTTCAAGTGCAAAACTTGCAGTAGAAGGTTTTCTTCTTTTCAAGCCCTTGGTGGTCACAGAGCAAGTCACAAGAAACCAAGGCTTATGATCACAGATCTTTCGTGCCATCATCACACGTTACCTAGTCCAACCACGAAAGAGCAACCTAGGATGCACCCATGTCCCATTTGTGGGCTTGAGTTTGCCATTGGACAAGCCTTGGGAGGGCACATGAGAAAGCATAGAACTGCCATTAATGATGGTTTGTTGAAGCGTAGAGATTCGGATTCTTTGTCCATTCTGAAGAAATCTAAAGATGGTGGAAGGTTGAATTTGTGTTTGGACTTGAACTTGATGCCGTTGGAGGATGATGATCTTAAGCTCAATCTAAGGACACCCGTTCTTAATTGTTTCATTTGA 531 0.4294 MKRIREEGELENMSNCLMLLTKVGVSETNPASKGRELRDSDIGDFKCKTCSRRFSSFQALGGHRASHKKPRLMITDLSCHHHTLPSPTTKEQPRMHPCPICGLEFAIGQALGGHMRKHRTAINDGLLKRRDSDSLSILKKSKDGGRLNLCLDLNLMPLEDDDLKLNLRTPVLNCFI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01607 176 SUPERFAMILY beta-beta-alpha zinc fingers 45 118 IPR036236 -
Phco10g01607 176 PANTHER ZINC FINGER PROTEIN ZAT5 6 161 - -
Phco10g01607 176 Pfam C2H2-type zinc finger 45 70 - -
Phco10g01607 176 Pfam C2H2-type zinc finger 96 120 - -
Phco10g01607 176 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Phco10g01607 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Phco10g01607 176 SMART c2h2final6 45 67 IPR013087 -
Phco10g01607 176 SMART c2h2final6 96 118 IPR013087 -
Phco10g01607 176 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Phco10g01607 176 Gene3D Classic Zinc Finger 24 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01607 Phco-Chr10 38850790 38851320 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco10g01607 zf-C2H2_6 3.6e-08 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01607 10 38850790 38851320 Phco9g00754 9 5578531 5578935 PCT