Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01571 ATGGAGCCGTCAGAAAAGTCGCCGAAAAAAGTATCATCAGTCAGATCATCATTTCCGAGAGATCCACGTGGCTCACTCGAAGTGTTCAACCCAAACACTTCAACTGCAACGAACTCGCGCGTGCGTTCACAGCCGCTTTGGAAATCGTGGACGGAGTCGGAGGAATCGCGGAATGAAATCGCCGCCACGTCGTGGATGGCGATTAATCCGGCGCCGCAAGCAGAAGTAGAATGCGGCGCGGCGGCGCAGAGGGCTGCGGAGTGGGGGTTGGTGCTCCGAACCGACACCGAGACCGGCAAGCCGCAGGGCGTGGCGGCGAGGAACTCCGGCGGCGAGGAACCTAACGTTGCCAAACTTGCCGCCGCTGCTTCGTCTTCCAGGAAGAACTCTCAGAACTCCGCCAGAACCTCCGGCGACTCCTCCTCTGACGGCGGCGGCGACGTTGTTGGTGGAATTCCGAGAATTTCGGAGGACGTGATGGGGGCTTTGTCGGCTTTCCAACAAACTTTCGTGGTTTCGGATGCTACTAAACCCGATTGCCCGATCCTGTATGCGAGTGCCGGGTTCTTTAAAATGACGGGTTATACGTCCAAGGAAGTTATTGGCAGAAACTGTCGGTTTTTACAGGGTGCGGAGACTGATTGTGGTGATGTGGCAAAGATAAGGGAAGCATTGGAAGCTGGGAAAATTTACTGCGGAAGGCTATTAAATTACAAGAAGGATGGGACACCTTTCTGGAACCTTCTTACCATTTCACCAATCAAGGATGAAGATGGCAAGGTCCTCAAATTTATCGGAATGTTAGTGGAGGTTAGCAAGCACACGGAGGGGTTGAAGGAGAAGACTCTACGTCCCAATGGATTACCGGAATCCTTGATTCGATACGATGCACGCCAGAAAGAGAAGGCTACAAACTCAGTATCTGAGTTGTTGCAGATCATGAAGCGCCCCCGAGCATTGAGTGAATCCGCAGGTCGGCCCTCCATTAAAAAATCAGGATATGCTGAGGAAGAAAAACAATCACTACATGAAGAAGAAGAAGAAGAGGAGAAGGAGGAGAAAGAGAAAGCAAAAAAAACTTTAAGAAGAAAATCCGAGAGTGAGGCTTCATTAGGACGCAAATCAGAAGGAGGAAATAAAATTTCCATGCAACGAATCAGTGAAGTGCCTGAAAATAAACTGAAAAACTCTCAGCGCCGTTCCTTCATGGGGTTCAGGCGGAAAAGTGAGTCCAACGATGAAAGCATGGAAAATGAAGTTATTGAGGATGTCAGCTCTGATAGTGAGGATGGTGAGAGGCCTGATAGTTTTGATGTAGATGACAAAGAAAAGCAGAGGGAAAAGAGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCAATAATCTTTGCATCGGATAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGGAATTGCAGGTTTCTACAAGGACCTGAAACTGATCCAGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACCGTGCAACTGATTAATTATACAAAGAGTGGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTAGATGGTAGTCAACATGTAGAGCCTCTTCAGAACTGCATCGCAGAAGATACTGCAAAGGAGGGAGAACAAATGGTCAAACAAACTGCAGAAAATGTTGATGTGGCAGTGAGAGATCTTCCGGATGCTAATATGAAACCAGACGATTTATGGACAAATCATTCAAAAGCAGTTCACCCCAAACCTCATAGGAAGGATAACCCTGCATGGAAAGCTATCCAGAAGGTCCTAGAAAGTGGAGAACAGATAAGCTTAAAGCACTTTAGGCCGATTAAACCTTTAGGATCAGGAGATACTGGCAGTGTGCATCTGGTGGAGCTACGTGGAACAGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGTTTGCGCAGAGAGAGAAATTCTTGACCAGCTGGACCACCCATTTCTACCTGCATTATATGCTTCGTTCCAGACCAAATCACACGTTTGTTTGATAACTGATTATTGTCCTGGCGGAGAATTATTCATGCTTCTTGACCAGCAACCAACTAAGGTTCTAAAGGAAGACGCCGTGAGATTTTATGCAGCTGAGGTAGTGATTGCATTGGAGTACCTTCACTGCCAAGGGATAATATATCGAGATTTGAAGCCTGAAAATGTGTTAATCCAGAGCAATGGGCATGTGTCCCTAACAGATTTTGATTTGTCATGTTTAACTTCTAGTAAGCCACAGCTTTTAATTCCAGCTTCCAATTCAAAGAAGAAGAAGAAGAAGAAACAGAGAAGTCAGGAGGTTCCTGTGTTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCTGGTCACACTAGTGCTGTTGATTGGTGGGCGCTAGGTATTCTTGTATATGAAATGTTTTATGGATATACTCCATTCCGGGGGAAGACAAGACAAAAAACGTTTGCAAATATTCTTCACAAGGATCTCAAATTTCCCAAAAGTAAACCAGTAAGTCTCCAGGGAAAGCAGCTAATTTATTGGTTGTTGCAGAGAGATCCCAAAGAAAGATTGGGGTCACGTGAAGGAGCAAATGAAATTAAACGTCATCCTTTCTTCAAGGGTGTCAATTGGGCACTAGTTCGTTGCATGAAACCTCCTCAACTTGATGCTCCTCTCTTACCGAAAACTGAAGAAGAAAAAGAAGCCAGAGATATAGATCCTGGACTAGAAGATTTGCAGACAAATGTTTTCTGA 2961 0.4509 MEPSEKSPKKVSSVRSSFPRDPRGSLEVFNPNTSTATNSRVRSQPLWKSWTESEESRNEIAATSWMAINPAPQAEVECGAAAQRAAEWGLVLRTDTETGKPQGVAARNSGGEEPNVAKLAAAASSSRKNSQNSARTSGDSSSDGGGDVVGGIPRISEDVMGALSAFQQTFVVSDATKPDCPILYASAGFFKMTGYTSKEVIGRNCRFLQGAETDCGDVAKIREALEAGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMLVEVSKHTEGLKEKTLRPNGLPESLIRYDARQKEKATNSVSELLQIMKRPRALSESAGRPSIKKSGYAEEEKQSLHEEEEEEEKEEKEKAKKTLRRKSESEASLGRKSEGGNKISMQRISEVPENKLKNSQRRSFMGFRRKSESNDESMENEVIEDVSSDSEDGERPDSFDVDDKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLQNCIAEDTAKEGEQMVKQTAENVDVAVRDLPDANMKPDDLWTNHSKAVHPKPHRKDNPAWKAIQKVLESGEQISLKHFRPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKGVMLNRNKVHRVCAEREILDQLDHPFLPALYASFQTKSHVCLITDYCPGGELFMLLDQQPTKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSSKPQLLIPASNSKKKKKKKQRSQEVPVFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILVYEMFYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKERLGSREGANEIKRHPFFKGVNWALVRCMKPPQLDAPLLPKTEEEKEARDIDPGLEDLQTNVF 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01571 986 CDD STKc_phototropin_like 649 964 - -
Phco10g01571 986 SMART serkin_6 651 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01571 986 Pfam PAS domain 473 565 IPR000014 -
Phco10g01571 986 Pfam PAS domain 176 272 IPR000014 -
Phco10g01571 986 FunFam Putative LOV domain-containing protein 169 325 - -
Phco10g01571 986 CDD PAS 182 271 IPR000014 -
Phco10g01571 986 MobiDBLite consensus disorder prediction 318 450 - -
Phco10g01571 986 MobiDBLite consensus disorder prediction 94 151 - -
Phco10g01571 986 Gene3D Transferase(Phosphotransferase) domain 1 735 964 - -
Phco10g01571 986 ProSiteProfiles Protein kinase domain profile. 651 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01571 986 Gene3D Phosphorylase Kinase; domain 1 650 974 - -
Phco10g01571 986 MobiDBLite consensus disorder prediction 380 399 - -
Phco10g01571 986 ProSitePatterns Protein kinases ATP-binding region signature. 657 680 IPR017441 GO:0005524
Phco10g01571 986 MobiDBLite consensus disorder prediction 352 373 - -
Phco10g01571 986 MobiDBLite consensus disorder prediction 609 629 - -
Phco10g01571 986 MobiDBLite consensus disorder prediction 430 450 - -
Phco10g01571 986 Pfam Protein kinase domain 653 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01571 986 SMART pac_2 527 569 IPR001610 -
Phco10g01571 986 SMART pac_2 232 274 IPR001610 -
Phco10g01571 986 FunFam LOV domain-containing protein 650 734 - -
Phco10g01571 986 ProSiteProfiles PAS repeat profile. 450 523 IPR000014 -
Phco10g01571 986 PANTHER FLIPPASE KINASE 1-RELATED 351 959 - -
Phco10g01571 986 SUPERFAMILY Protein kinase-like (PK-like) 632 961 IPR011009 -
Phco10g01571 986 MobiDBLite consensus disorder prediction 27 57 - -
Phco10g01571 986 ProSiteProfiles PAC domain profile. 524 578 IPR000700 -
Phco10g01571 986 MobiDBLite consensus disorder prediction 122 143 - -
Phco10g01571 986 Gene3D PAS domain 169 327 - -
Phco10g01571 986 SMART pas_2 452 521 IPR000014 -
Phco10g01571 986 SMART pas_2 157 226 IPR000014 -
Phco10g01571 986 FunFam Putative LOV domain-containing protein 735 953 - -
Phco10g01571 986 NCBIfam PAS domain S-box protein 182 275 IPR000014 -
Phco10g01571 986 NCBIfam PAS domain S-box protein 475 565 IPR000014 -
Phco10g01571 986 ProSiteProfiles PAC domain profile. 229 283 IPR000700 -
Phco10g01571 986 Coils Coil 334 367 - -
Phco10g01571 986 MobiDBLite consensus disorder prediction 1 57 - -
Phco10g01571 986 FunFam LOV domain-containing protein 439 603 - -
Phco10g01571 986 SUPERFAMILY PYP-like sensor domain (PAS domain) 176 268 IPR035965 -
Phco10g01571 986 Gene3D PAS domain 438 603 - -
Phco10g01571 986 ProSiteProfiles PAS repeat profile. 155 204 IPR000014 -
Phco10g01571 986 MobiDBLite consensus disorder prediction 615 629 - -
Phco10g01571 986 CDD PAS 465 565 IPR000014 -
Phco10g01571 986 ProSitePatterns Serine/Threonine protein kinases active-site signature. 772 784 IPR008271 GO:0004672|GO:0006468
Phco10g01571 986 SUPERFAMILY PYP-like sensor domain (PAS domain) 466 565 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01571 Phco-Chr10 38534581 38544721 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco10g01571 Pkinase 1.8e-65 CL0016