Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01569 ATGGGTTGCTTTCGTTGCACAGGCAAATCAAGCAAAAAATCCAACAACGTTAATCGCACCCAGAAGCACATTGTTGCTGTTTCCAAAATTGATTTGAAAGTGAATGGTAAAAGTGAAGATAATCATCGTAAACCTGACCAACTATCTATGGAGGCAAAGAATTTGAATTTAAAAGAGATTTCTGATGAAGGAAAAGTTAAAAGTTATCGGGCACAAACATTTACTTTTGATGAGCTTGCAACTGCAACAAGGAATTTTATGTCAGATTGCTTTCTGGGTGAAGGAGGGTTTGGCAAGGTTTATAAGGGGTTCATAGAGAAAATAAATCAGGTTGTGGCAATAAAGCAACTAGACCTTTATGGGCATCAAGGAATTAGGGAATTTGTTGTTGAAGTATTGACCTTGAGTTTGGCAGATCACCCTAATTTGGTTACATTGATTGGGTTTTGTGCTGAGGGAGAGGAAAGGCTATTGGTTTATGAGTACATGCCATTAGGATCTTTGGAGAACCATTTGCATGATCTTCCACATAGTAGAAAACCACTTGATTGGAATACAAGAATGAAAATTGCAGCTGGTGCAGCTAGAGGTTTAGAGTATTTGCATGATATAATGAAGCCTCCAGTGATATACCGTGACTTGAAGTGCTCCAATATTTTATTAGGTGAGGGTTATCATCCCAAGTTATCTGATTTTGGCTTGGCAAAAGTAGGACCAAGTGGTGATCAGACCCACGTATCAACAAGAGTTATGGGAACATATGGGTATTGTGCCCCAGATTATGCAATGACGGGTCAATTGACGTTCAAGTCTGACATTTATAGCTTTGGAGTTGTTCTTTTGGAGATCATCACAGGCAGGAAGGCCATTGACAACATGAAACCTACTAAAGAACAAAATCTAGTTGCATGGGCAAGACCTTTGTTCAAAAACAGAAGAAGATTCTCGGAGATGGTTGACCCATTGCTTGAAGGTCGCTATCCAGTAAGAGGATTGTACCAAGTTCTTGCCATTGCTGCCATGTGTGTTCAAGAGCAACCTAGTATGCGGCCTGTCATAGCTGATGTGGTCACAGCTCTAAATTACCTTGAATCCCAGAAGTACGATCCCCAACTTCATTCAGTTCAAAGCTCTAAAAGTTTCTCTTCAAGAGCTAGAACCAGTGATCATAGACTAACTGTTAGCTATGGTTCTGATCCAAGAGTGAATCATAAACTACTTGGTAGTAATGGCAGCAGTAGTGGTTCGGAGACAGAAAGCTATATAGAACTATCTTCTCCAAGACTGCGAAGTGATGGTCATAAACATTTCTATAGTAATGGTTCCGAGACAGACAGTTCTTGA 1344 0.4003 MGCFRCTGKSSKKSNNVNRTQKHIVAVSKIDLKVNGKSEDNHRKPDQLSMEAKNLNLKEISDEGKVKSYRAQTFTFDELATATRNFMSDCFLGEGGFGKVYKGFIEKINQVVAIKQLDLYGHQGIREFVVEVLTLSLADHPNLVTLIGFCAEGEERLLVYEYMPLGSLENHLHDLPHSRKPLDWNTRMKIAAGAARGLEYLHDIMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDQTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAIDNMKPTKEQNLVAWARPLFKNRRRFSEMVDPLLEGRYPVRGLYQVLAIAAMCVQEQPSMRPVIADVVTALNYLESQKYDPQLHSVQSSKSFSSRARTSDHRLTVSYGSDPRVNHKLLGSNGSSSGSETESYIELSSPRLRSDGHKHFYSNGSETDSS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01569 447 Gene3D Phosphorylase Kinase; domain 1 46 162 - -
Phco10g01569 447 MobiDBLite consensus disorder prediction 374 447 - -
Phco10g01569 447 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Phco10g01569 447 Gene3D Transferase(Phosphotransferase) domain 1 163 386 - -
Phco10g01569 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Phco10g01569 447 SUPERFAMILY Protein kinase-like (PK-like) 72 386 IPR011009 -
Phco10g01569 447 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01569 447 PANTHER OS07G0668900 PROTEIN 3 372 - -
Phco10g01569 447 MobiDBLite consensus disorder prediction 405 425 - -
Phco10g01569 447 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g01569 447 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
Phco10g01569 447 MobiDBLite consensus disorder prediction 374 394 - -
Phco10g01569 447 Pfam Protein tyrosine and serine/threonine kinase 92 358 IPR001245 GO:0004672|GO:0006468
Phco10g01569 447 CDD STKc_IRAK 92 361 - -
Phco10g01569 447 FunFam probable serine/threonine-protein kinase RLCKVII 58 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01569 Phco-Chr10 38522300 38525505 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Phco10g01569 PK_Tyr_Ser-Thr 1.6e-43 CL0016