Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01556 ATGGATCCTTCTAGTGGACAACCCCAGCAAATATCTTGCCAGTCAGTGGAGAAGAAACCAAGGCCTAATCCAGAACAAGCTCTGAAATGCCCAAGATGCGACTCCACCAGCACAAAATTTTGCTACTACAACAATTATAGTCTTTCTCAGCCAAGATATTTCTGTAAGTCTTGTAGGAGATATTGGACCAAAGGAGGAACACTCAGGAATGTTCCAGTGGGAGGAGGATGCCGAAAGAAGAGATCATCACCATCATCATCGTTAAAGAGGGATCATGATCAGACCTTCACACCCAATCTTAATCCACTCACTACATTTCCTCAGTTGTCTTATAGCTCCAATGACTTTGCTCTAGCATTAGCTAGGCTTCAAAAACAATCAAGTGGGCAATTGGGTTACAATGACCATGAAATTTCTGCTTTGAGGAACCCCACAGGCTCCTTTTGTGACATTCTTAGCAATTCAGGCATGAATCCCTCCTCAGCAAACCCTTCATTTTTGGACGCAATTCGAACTGGGTTCCTCGAAACACAAAATCATCTTCAGAATTTGTATTACATGTATGGAAATGGGGACATGGGGGAGGTGGATAATGGCAATTCTGGTGGAGTTGGGGTCAGTGGAGAGATGATGCTCCCTTATAATCAAGTGATGAGCAATGCAGCCACTCAATCAATGAGTGAGTTGATGAGGCAAGAACAGTGTGGTGGCAGTGAACAAAGTGAAAGGAAGTTGTTGGGGAGTTCGCCATGGCAGCTTAATGCAGACACAAACGTTTGTGAAATTGATTCAGGAAGAGCAATTGCAAGTTGGAACGGTTTCACATCTTCTTGGCATGGACTTCTCCATAGCCCCCTAATGTAG 864 0.4398 MDPSSGQPQQISCQSVEKKPRPNPEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSSPSSSLKRDHDQTFTPNLNPLTTFPQLSYSSNDFALALARLQKQSSGQLGYNDHEISALRNPTGSFCDILSNSGMNPSSANPSFLDAIRTGFLETQNHLQNLYYMYGNGDMGEVDNGNSGGVGVSGEMMLPYNQVMSNAATQSMSELMRQEQCGGSEQSERKLLGSSPWQLNADTNVCEIDSGRAIASWNGFTSSWHGLLHSPLM 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01556 287 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Phco10g01556 287 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Phco10g01556 287 MobiDBLite consensus disorder prediction 1 28 - -
Phco10g01556 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 194 IPR045174 GO:0003700|GO:0006355
Phco10g01556 287 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Phco10g01556 287 MobiDBLite consensus disorder prediction 73 100 - -
Phco10g01556 287 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01556 Phco-Chr10 38323777 38325031 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco10g01556 zf-Dof 6.6e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01556 10 38323777 38325031 Phco10g01556 10 38323777 38325031 ECH
Phco10g01556 10 38323777 38325031 Phco9g00815 9 6245459 6246774 PCT