Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01550 ATGGAGAGTGACACAAACGCTACCCTTACTTCCTCTCCCACATTCTCTCACTCCTCTAACACCCTTTCTTCTTCTTCCCCTCCCCAAGTCGTCATGACCCCTTGTGCTGCATGCAAAATCCTCAGGCGAAGATGTGCTGACAAATGTGTGTTGGCACCTTATTTCCCTCCCACCGAACCGGCCAAGTTCACCACTGCTCACCGTGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGTCTCAGAGAGCTGATGCAGTGGCGAGCATGGTTTACGAGGCTGGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGCCAGCTCCAAAAGCAGGTCAATGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAACCATGCAATTACAACAAGCCAATCTCGTGGCTCTAATTTGCATGGAAATGTCACAGACTCCACAGGAATCACCACAACAATCCCTGGACAATTTCATCACAAGTCCTTCCCACAACAGTGGATATCAGAACAATCTCAGTTTCTTTGAGGAAAACACCAACCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 600 0.4783 MESDTNATLTSSPTFSHSSNTLSSSSPPQVVMTPCAACKILRRRCADKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVTMQLQQANLVALICMEMSQTPQESPQQSLDNFITSPSHNSGYQNNLSFFEENTNLNSLWEPLWT 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01550 199 MobiDBLite consensus disorder prediction 1 29 - -
Phco10g01550 199 Pfam Lateral organ boundaries (LOB) domain 34 131 IPR004883 -
Phco10g01550 199 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Phco10g01550 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 33 162 - -
Phco10g01550 199 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01550 Phco-Chr10 38281954 38283580 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco10g01550 LOB 3.7e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01550 10 38281954 38283580 Phco10g01550 10 38281954 38283580 ECH
Phco10g01550 10 38281954 38283580 Phco9g00818 9 6292715 6294168 PCT