Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01510 ATGTCTGAGATATTGCACGCATTTTCCCTTTTTGTTTGTGATTTTGTTTTTCTTTCCAACTTTGAAGAAATTGTGAAAGACTGTGTTTCGGAACCGGATATTGCTAACATGAAGGACTCTTGGTTTTTCGACAATAACTTCAATGGTCTGTCAGATGATATTTTTGATGATGTCGTGGGCTTTTTTGATTTCCCACTGGAAGATGTGGAAGAAGACTGGGATTCTCAATTTAAATGCCTTGAAGACCAACATTCTGATGTTTTTTCAGCGTCATCAAATGGGCTGTGCGGCAAAACTCAAACTGAAAACCCCCAACTTGGGACGGAGTTCTCTGTTTCTTGTAATGGGATTTCCCCAATAAAACAGCTGGCAAAGGCTCCTGGACCAACATATGGAAAAATCATTCCCCTCAAGAATGTCACTTTCAATGGAAAAGATTTGCATCAATTCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCTGTTGAGAATTCAAACTTTGATCGGCCTGTCATTCCAGTAAAGCGTGCTCGAAGTAAACGGCAGCGCCGTTCAAGCTTGAGTCCACTATTTTCCATTCCTTACATCCTTAACGCACAGGCTTTGCAAAATCAGCAAAGGACATCTGCCTCTGAATCAGATTTCGAAACTAATGTTGCTGGGAACATGTCAAACAAAGTAAAAAGCCACAGAAAAAAGGACTTCTCCCTGTTATCAGAAGATGTTGAGATGATGAGATCCTCACATCTGGTGTCAGATCCCCCAAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGATACAGGTCTGGCCGCCTCTTTCCTGAATACAGGCCAGCAGCTAGCCCAACTTTTGTTTCATCATTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCAGAGTTGAGGAGGGTGTTAGGGGTTCTATGTTTGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 1047 0.4269 MSEILHAFSLFVCDFVFLSNFEEIVKDCVSEPDIANMKDSWFFDNNFNGLSDDIFDDVVGFFDFPLEDVEEDWDSQFKCLEDQHSDVFSASSNGLCGKTQTENPQLGTEFSVSCNGISPIKQLAKAPGPTYGKIIPLKNVTFNGKDLHQFRTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRRSSLSPLFSIPYILNAQALQNQQRTSASESDFETNVAGNMSNKVKSHRKKDFSLLSEDVEMMRSSHLVSDPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVSSLHSNCHKKVVEMRSRVEEGVRGSMFASSNLHGNSVG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01510 348 FunFam GATA transcription factor 252 338 - -
Phco10g01510 348 Gene3D - 256 328 IPR013088 GO:0006355|GO:0008270
Phco10g01510 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 319 - -
Phco10g01510 348 SMART GATA_3 257 307 IPR000679 GO:0006355|GO:0043565
Phco10g01510 348 CDD ZnF_GATA 262 309 IPR000679 GO:0006355|GO:0043565
Phco10g01510 348 ProSiteProfiles GATA-type zinc finger domain profile. 257 293 IPR000679 GO:0006355|GO:0043565
Phco10g01510 348 PANTHER GATA TRANSCRIPTION FACTOR 70 329 - -
Phco10g01510 348 Pfam GATA zinc finger 263 296 IPR000679 GO:0006355|GO:0043565
Phco10g01510 348 ProSitePatterns GATA-type zinc finger domain. 263 288 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01510 Phco-Chr10 37899911 37903645 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco10g01510 GATA 4e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01510 10 37899911 37903645 Phco10g01510 10 37899911 37903645 ECH
Phco10g01510 10 37899911 37903645 Phco9g00885 9 6890554 6899397 PCT