Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01492 ATGTCTCTGCGTCGTTTTCCCTATAAACACAACGTAGTAGTCCGTGTTTCTTACCTCCTACTTCTTGTTTCTGCATATTCAACAATAATGCTTTCAAGAAGAGGTTTTGTCATCGGATTGTTAAACTTGGTAAGTTGGGAAATGAGCAGTTTAAGGCCTGAGTCTCATGTGGCACAGCAAATTCGGCGCGAAAAATTGAGAATCCAAAACAGTTCTCAACCTCTGCACGAATTCCCTAACAATCTTGAACCGTTATCTTTGCAGCCGGGGTTTCATAACTTTGACCTTCTTCATGTTAGGAATGTTAGAAACGCTAACATGCTTGATGAACCAGTTGTTTATTCACTAGAAATGCCAAACTTCTCCACTTCTTTGAACCCCTTGTCTGCTCCAAAGAACGCCTTGGAGTATCATCAAGAAATAGGTGCAGCTGAACCGAGTAATAGGCTGATGATGAATGAGTATGGTTCATTTTCCCATTCCATGCCTGCTATTCATTCTTCCCATAAGGAACAGTGTGAGCTTCGTAATTTGGGAAATTGGAGGAACAGTGCTCCCCAGCAAGGATCTGATTGGTTTGTAAATTATGCAAGTAATGCCAATTCTTTTTTGTCTTCTGAGCTCAACAATGTGTCTTCTTACAACGAACTAATGGATGTACAGTGTAGCAATGCATCTGATGAAATCAGTGGTAGAGAAATTCAAAAGCAATTAGGTGTACTGCATAATACTGCTCTTCCTCCTTCTCCACTGTATCAGAATGCTTTGCAAGATATTGTGAAGTCGACTTCTATCAGCGCCCACACCAGGCAAGATATGACTTCCCTAATGCAACAGAACGACCACAGCATCTGGGTGGGTGGTGCTAGTGAAGTTGAGCTTCAACAACCGAGTTATGGAAATCAGCCAAATCCGGTGCGTTTTGGATGGACAAATCGAGCAATAGATAATATCCCGAATGATTCACTTCCTCAGAGCTTATCCTTGTCACTTTCATCGAATGCACAACCCAAGCCTTCTGTTTCTCAACATGAGCAAGGGTCTACATCCGATTATCCTCGTTGTTTGAAGTACATGAAGCCGTCTATTGTTTCTAGAGATTGTGCGAAATCAGTTCAAGACACGGTGGGAATGCCTTCAAAGAGTACTGTTAGTTACCGAAGTGTGGGTCCCCTTGGCCCTTTCACTGGGTATGCTACTATTCTTAAGAGTTCAAGGTTCTTAAAGTCTGTCCAACAGTTGTTAGATGAGATTTTCTGTCTATCTGGTGCAAAGTTTGCGAAATCATATGATGTTTCAGAACGGGTTTCTCCAGAAGTTAGTGCTTCTACTTCTGCAGATACTGTTACTGTCAATGAAACTGGGGTTACTGCAAAAGGTAGTAACTCAGGTTCTTCATCAACTATGTTGTATAATGTCTCAAAGGAAAATAGTGCTGATTTGGGAGTTGGAAGTAGCTTTGATCTTTCTTCGCGGCCAGATTATCAACAGAAGAAAGCAAAACTACTGTACATGCAAGAGGAGGTTACGAGGCAATGCAAGCAGTACCATCTACAAATGCAAATGGTTATGTCATCATTCGAGTCAGTAGCGGGTCTTAGTTCTGCTACTCCTTACATCTCCATGGCTCTCAAGTCAGTATCAAAACACTTCAGGTGCCTAAAAAATTCTATCTCAGATCAGCTCAAGCTTATAAGCGAAGCCTTGGGAGAGGATGTGTCAATACCCTCTTCCAGTACTGGCAGTAAAGCTGACACTAATATGGCAAGGATAAGATGCAGCATGGACCAAAGCTTTCTTAGGAACAAATCAGGCAAGGGTACTACGGATCATCTTGATCCCCAACAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACAGGCTGGCTAGTCAAACAGGTCTATCACGGAATCAGGTATCAAATTGGTTCATAAATGCTCGGGTACGAGTATGGAAGCCAATGGTTGAGGAAATACACATGCTGGAAACAAAAGCAACAGGCACCAAGGAGAAGAGTGGTAAACATGAGGGAACATCTTCTGGCCCTGAAGGTGATACCAGCCTACCTAGAGTGGATATGCCTTTGAGCAATATTGGTATGAATTCAATACCTGAAAACCGATTTGAGGGTATGGAAATGGAATCAAGCAATGCTGAGGAAAGTGGGTTAAACGAAGAACAATGGAGTCAAGAGAAGAGATCTAAATTGGAATGCCAAATGACATCAAACACTATGGATGGTACACTGATGGGTTTTGTGCCATACCGACGTGGTGGCCTTGAGGTTGGTGGACTGGGTTCTGTGTCACTAACGTTGGGTCTTAGGCATGGTTTTGAAGGGGTACAACACCCACAACAATTGCAAGAGGAGCAGCTTAGACATCACCTTGGAGGGCACATGATCCGTGACTTTGTGGGCTGA 2499 0.4314 MSLRRFPYKHNVVVRVSYLLLLVSAYSTIMLSRRGFVIGLLNLVSWEMSSLRPESHVAQQIRREKLRIQNSSQPLHEFPNNLEPLSLQPGFHNFDLLHVRNVRNANMLDEPVVYSLEMPNFSTSLNPLSAPKNALEYHQEIGAAEPSNRLMMNEYGSFSHSMPAIHSSHKEQCELRNLGNWRNSAPQQGSDWFVNYASNANSFLSSELNNVSSYNELMDVQCSNASDEISGREIQKQLGVLHNTALPPSPLYQNALQDIVKSTSISAHTRQDMTSLMQQNDHSIWVGGASEVELQQPSYGNQPNPVRFGWTNRAIDNIPNDSLPQSLSLSLSSNAQPKPSVSQHEQGSTSDYPRCLKYMKPSIVSRDCAKSVQDTVGMPSKSTVSYRSVGPLGPFTGYATILKSSRFLKSVQQLLDEIFCLSGAKFAKSYDVSERVSPEVSASTSADTVTVNETGVTAKGSNSGSSSTMLYNVSKENSADLGVGSSFDLSSRPDYQQKKAKLLYMQEEVTRQCKQYHLQMQMVMSSFESVAGLSSATPYISMALKSVSKHFRCLKNSISDQLKLISEALGEDVSIPSSSTGSKADTNMARIRCSMDQSFLRNKSGKGTTDHLDPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHRLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGTKEKSGKHEGTSSGPEGDTSLPRVDMPLSNIGMNSIPENRFEGMEMESSNAEESGLNEEQWSQEKRSKLECQMTSNTMDGTLMGFVPYRRGGLEVGGLGSVSLTLGLRHGFEGVQHPQQLQEEQLRHHLGGHMIRDFVG 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01492 832 SMART HOX_1 619 683 IPR001356 GO:0003677
Phco10g01492 832 ProSiteProfiles 'Homeobox' domain profile. 616 679 IPR001356 GO:0003677
Phco10g01492 832 SUPERFAMILY Homeodomain-like 621 685 IPR009057 -
Phco10g01492 832 SMART prehox3 396 560 IPR006563 -
Phco10g01492 832 MobiDBLite consensus disorder prediction 689 729 - -
Phco10g01492 832 Pfam Associated with HOX 401 559 IPR006563 -
Phco10g01492 832 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 314 704 - -
Phco10g01492 832 Gene3D - 622 684 - -
Phco10g01492 832 MobiDBLite consensus disorder prediction 689 704 - -
Phco10g01492 832 MobiDBLite consensus disorder prediction 326 350 - -
Phco10g01492 832 Pfam Homeobox KN domain 636 675 IPR008422 GO:0003677|GO:0006355
Phco10g01492 832 MobiDBLite consensus disorder prediction 326 352 - -
Phco10g01492 832 CDD homeodomain 619 680 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01492 Phco-Chr10 37669099 37675068 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco10g01492 POX 3.2e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01492 10 37669099 37675068 Phco10g01492 10 37669099 37675068 ECH
Phco10g01492 10 37669099 37675068 Phco9g00906 9 7106757 7112173 PCT