Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco10g01468 | ATGTTGTCAGAAATATTGGACATGGAAGGGATGGCCACGGAGGAACTTGTCTCATGCAACAACGATCCAACCAACATAGCCAAAGGCAAGCGCACAAAGCGGCGCTTGAGGCCTTTGTCGCCTTGTGTTGTCACCGCCGTCACTGCCACGGCCGCCGCCGCCGCCATGACGTCGAGCTGTTCAAGTGCTTCTGGCGGCGGTGGTGGGTCGTTTTCATCAGTCACCTTGGAGGAGGAAGAGGAAGACATGGCCAATTGTTTGATTCTCCTGGCGCAAGGAAGAGGAGGAAGGGACCCTCTTCATCACAAGGAGCTATGTGATGATGTGAAGACAGAGAAGGGTGGCAACAAAATTGAATTTTATGTTTATGAGTGCAAAACATGCAACAGAACATTCCCTTCTTTTCAAGCACTCGGTGGCCACAGGGCGAGTCACAAGAAGCCCAAGGTTGAGGAAAAGAAATCCCCACCGCCGCCGTTGCCACCGCCACCGTCTTCCTCGTCCCAACTATTTAATTTTGAAGAAACAAAACAGAATCACATGAAGATTAGCACTTCAGTGTCGCTTCAATTAGGGTGTGGAAACAATAGGGGTGGTTTGAATTTCCATGGAAACAAGTCCAAGATTCACGAGTGTTCCATTTGTGGGTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGGTCATCTAACAACAATAATACTAATACTAATACTGTTGTTCAGACAACAACAACTTCTGATGGTGCTGTTGAAGTTAAGCCCCGGAATGTTCTAGAATTAGATCTCAACCTGCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAGTTTCCGGGGAATCCGAATTCCATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG | 915 | 0.4929 | MLSEILDMEGMATEELVSCNNDPTNIAKGKRTKRRLRPLSPCVVTAVTATAAAAAMTSSCSSASGGGGGSFSSVTLEEEEEDMANCLILLAQGRGGRDPLHHKELCDDVKTEKGGNKIEFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSPPPPLPPPPSSSSQLFNFEETKQNHMKISTSVSLQLGCGNNRGGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRSSNNNNTNTNTVVQTTTTSDGAVEVKPRNVLELDLNLPAPEDDLRDSKFQFPGNPNSMMLSAAPALVGCHY | 304 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco10g01468 | 304 | MobiDBLite | consensus disorder prediction | 230 | 246 | - | - | |
| Phco10g01468 | 304 | SUPERFAMILY | beta-beta-alpha zinc fingers | 122 | 232 | IPR036236 | - | |
| Phco10g01468 | 304 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 75 | 285 | - | - | |
| Phco10g01468 | 304 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 212 | 232 | IPR013087 | - | |
| Phco10g01468 | 304 | Gene3D | Classic Zinc Finger | 201 | 262 | - | - | |
| Phco10g01468 | 304 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 210 | 237 | IPR013087 | - | |
| Phco10g01468 | 304 | SMART | c2h2final6 | 210 | 232 | IPR013087 | - | |
| Phco10g01468 | 304 | SMART | c2h2final6 | 123 | 145 | IPR013087 | - | |
| Phco10g01468 | 304 | MobiDBLite | consensus disorder prediction | 227 | 246 | - | - | |
| Phco10g01468 | 304 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 123 | 150 | IPR013087 | - | |
| Phco10g01468 | 304 | MobiDBLite | consensus disorder prediction | 139 | 170 | - | - | |
| Phco10g01468 | 304 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 125 | 145 | IPR013087 | - | |
| Phco10g01468 | 304 | Pfam | C2H2-type zinc finger | 122 | 148 | - | - | |
| Phco10g01468 | 304 | Pfam | C2H2-type zinc finger | 210 | 234 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco10g01468 | Phco-Chr10 | 37342753 | 37343667 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Phco10g01468 | zf-C2H2_6 | 2.2e-11 | CL0361 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco10g01468 | 10 | 37342753 | 37343667 | Phco10g01468 | 10 | 37342753 | 37343667 | ECH | |
| Phco10g01468 | 10 | 37342753 | 37343667 | Phco2g02074 | 2 | 51495436 | 51496572 | ECH | |
| Phco10g01468 | 10 | 37342753 | 37343667 | Phco9g00952 | 9 | 7750179 | 7751093 | ECH | |
| Phco2g02074 | 2 | 51495436 | 51496572 | Phco10g01468 | 10 | 37342753 | 37343667 | ECH | |
| Phco6g00705 | 6 | 7022500 | 7023291 | Phco10g01468 | 10 | 37342753 | 37343667 | ECH | |
| Phco10g01468 | 10 | 37342753 | 37343667 | Phco9g00952 | 9 | 7750179 | 7751093 | PCT |